Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04464 ATGGCATTGCTTCGACCTTCATCTTTCCTAATCTTGTTGGCATATGGTGCACTAATAGTCATAGCCTCATTGACACCATGTTGGTATGTCATGGTCACACATATTGAGAAACATGTCAATTTGCACTCAGCAAATATTGTGTCCCAATTGCAATCACAAATTGAGTACTCTGATCAACTCTTACAACCAATTAAATCATCATCAACAAATTTATCTAGATTATTGAGTTCAACCCTTAATTCTACTAACATCACTTTCTTTGATGTTAACACCAAGGTCGCTCCGGTATTATTTCAAGCATTGAAGACAATTCCTCACTTAACACAAATCTCATACATGGGAGTGGATGGTCTTTTTTTCACACATTACAAGGATGGTGATCAAATTCTAGTAATGTACTCTAACACATCTAGTGGGGGTGCATCAAATAAAACCATACACTATATTCAACAAGTAAATAGTGACACTGGAGAGATTATTGGTGAAGCCATAATATCTAATAAAACTATCAATATTGATGCAAGTTGGATAAATGGAGCAAATAATATTTCACATGAATTTTCATCATTGGGAACAAAGTTGAGCAATGTTAGAGATCTATTGTTCATGAATTCAGCTAGAATCAATAGAATAGGAGGGATCTCACTTGGATTTTCGGCGAAAGCATTAACCGATTACGTGACTCGCACTGTCGATCGTCAAGGGACAAAATCGTATTTGGCTACCAAAGATGGGAAAGTTATTTCAAAAGGAATTGAAAATATTCGTTTGATGATTTTTAATGATAGTGTTTCTTTACAATCTGTGAATGCTAATGGTGATCTAATAAAGAATGAGGGAATTGTATCTTGCAAGGATCAAGTTGATGGTTCAAGTTTGAATATTCAAGATATTCAATATTTAATTCATTGCTACCCCATTGATATTATGGGAATAGAATCGGTATATGTATTGGCTGTCCCACAAAATGGAATTGTCATCTTTAATCCAAGTTATTACAAAGAAAATGGATTAATACTCATGATTGTGATGATGGTTCTAATATTCATGGCTATCTTGAGTTTTCTATTCATGAATGTTGGAATCAAAAGAAGAGAAATGCAATTGTGTGCTTCACTCATAAAACAAATGGAAGCAACCGAACAAGCTGAAAGAAAACATATGAATAAGAGTCTTGCTTTTGCTAGTGCTAGCCATGATGTTCGTGCTTATCTTGCTGGTCTTGTTGGTTTGATTGAGATGTCATCTAAATTAGTTGTTTCTAATTCAGATTTGGACAAACCACATTCTGAATTGGAGACTAATTTAAAACAAATGGATAATTGTGCACAAGACTTGCTAGGACTATTAAATTCTATACTTGACACAAGCAAAATTGAGGCAGGAAAAATGCAATTAGAGGAAGAGGAATTTGATTTATCATATCTTCTTGAGGATGTAGTTGATTTGTACTATCCAATGGCAATGAAGAAAGGTGTAGAACTTGTATTGGATCCTTGTAATGGTTCTGTTATCAAATACTCACGTGTGAAAGGTGATAGAAGAAAATTGAAGCAAATTTTGTGTAACTTGTTAAGCAATGCTGTGAAATTTACTGATGAAGGACACATAACAGTTAGAGCATGGACTCAGAAAGCAACATTGCAAAACTCAATAATCAAGAGTAATCAAAATAGTGTTGTGATGAAGCCTTTGTCTTGGTTGTTTGATAAGAAAAAGAAAGAATGTGAGGATATTGAAGCTGTGAATTCAGTTCAACATGATCCTTGTTTTATGGATTTTGTATTTGAAGTGGATGATACAGGGAAAGGAATTCCTAAAGAGAATCATAAGTTAGTGTTTGAGAATTATGTTCAAGTTAAAGAGAATTCTGTTGGTCAAGTTGGAACTGGCTTAGGACTTGGGATTGTGCAATCATTGGTACGTTTGATGCATGGAGATATTGCAATTGTGGACAAAGAATTTGGCAAAAAAGGAACATGCTTCAAGTTCAATGTGCTTCTCACTACATGTGAGAATGAGACAGTGACTTATAATTTAAGGGAAGCTTTTGAATATGGATCAACCTCAGGTAACAAAAACCAAACTCTAGACAAAAAAACCCTTCACACTACTAGTTCTGGTTCAAGCATTTGTTCATTGAGTCCAAGATTACATATTTGCCCCTCCTCTAGTATTAAGCCTGAGCTTTCACATGTTATTCTCTACATTGCTGATGAAGAAAGAAGAAGAACTTCACAATTGTTCATAGAGAGCTTAGGGATTAAAGTTATGGTTGTGAAGAATAGTAAACATCTAACTCATATTCTCAAGAAGATTAAAAAACCAAAGGGTCATCAAATCAGTGATCAAAGCTCATCGGAATCTTCGGAATTGAGTTCTAGATGTACATCTTATAATTCTTCTTATAGTAGAAGAGTTCCTTTGAGAACTATGGAACATGGAACTGAATTTGTATCTTCAATGTTTAATAAGACAAATATTGGAGCTACACCAAGTTTTGTTTTGATTATCATTGATGCAAATGTAGGACCATTTTCTAAGCTATGTAAGATTGTGTCAAATTTTAAGAAAGATGTTCTTAATCCTAGTAAAGTTGTTTGGTTGGAAAAGCCTTTTGAAAGTAATGTTGATTTCAAAAAAATTGATCAAGATGATATTGTGATATCAAAACCATTTCATGGTAGTAGATTGTTTCAAGTTATAAAACTTCTTCCTGAATTTGGTGGTAATTGGAAAAGCAATAATTCTAGAAGAGAATTTAGATCACAAGTAGTATCTAATGATGAAAGTGTGGAACAATATTGTTGGAAGGGAACTCAAAAATCTTATAAGGGAAAAAAATATTCAGTTCATCAAGGAGAAATACAAGAATGTGATGATTCAAGCAATTCTAAACCTTTGAGTGGAAAGAAATTTTTAGTTGCTGATGATAATCAAATGTTGAGAAAGATTGCTATGGCTACTTTGAGGTCACTTGGTGTGACTACTATTGACCAATGTGAGAATGGTGTTGAGGCTGTGAGATTAGTTGAAGAGGGTTTATCCAAGGATTTTTCTAATCCTCCTTATGATTACATCTTAATGGATTGTCAGATGCCAGAGATGGATGGATTTGAGGCAACAAGGCAGATAAGAGAGATGGAGAAACGATGTGGCCTTCACATTCCTATCATTGCATTATCTGCTGAAATTGACAAATTAACCACAGAGACTGGAATGGACTTTCACATAACCAAGCCCATTAAGAAAGAGCATTTACTCAAAGCTATTACATGCATAGAAAATAGTGACATAATGTAA 3303 0.3406 MALLRPSSFLILLAYGALIVIASLTPCWYVMVTHIEKHVNLHSANIVSQLQSQIEYSDQLLQPIKSSSTNLSRLLSSTLNSTNITFFDVNTKVAPVLFQALKTIPHLTQISYMGVDGLFFTHYKDGDQILVMYSNTSSGGASNKTIHYIQQVNSDTGEIIGEAIISNKTINIDASWINGANNISHEFSSLGTKLSNVRDLLFMNSARINRIGGISLGFSAKALTDYVTRTVDRQGTKSYLATKDGKVISKGIENIRLMIFNDSVSLQSVNANGDLIKNEGIVSCKDQVDGSSLNIQDIQYLIHCYPIDIMGIESVYVLAVPQNGIVIFNPSYYKENGLILMIVMMVLIFMAILSFLFMNVGIKRREMQLCASLIKQMEATEQAERKHMNKSLAFASASHDVRAYLAGLVGLIEMSSKLVVSNSDLDKPHSELETNLKQMDNCAQDLLGLLNSILDTSKIEAGKMQLEEEEFDLSYLLEDVVDLYYPMAMKKGVELVLDPCNGSVIKYSRVKGDRRKLKQILCNLLSNAVKFTDEGHITVRAWTQKATLQNSIIKSNQNSVVMKPLSWLFDKKKKECEDIEAVNSVQHDPCFMDFVFEVDDTGKGIPKENHKLVFENYVQVKENSVGQVGTGLGLGIVQSLVRLMHGDIAIVDKEFGKKGTCFKFNVLLTTCENETVTYNLREAFEYGSTSGNKNQTLDKKTLHTTSSGSSICSLSPRLHICPSSSIKPELSHVILYIADEERRRTSQLFIESLGIKVMVVKNSKHLTHILKKIKKPKGHQISDQSSSESSELSSRCTSYNSSYSRRVPLRTMEHGTEFVSSMFNKTNIGATPSFVLIIIDANVGPFSKLCKIVSNFKKDVLNPSKVVWLEKPFESNVDFKKIDQDDIVISKPFHGSRLFQVIKLLPEFGGNWKSNNSRREFRSQVVSNDESVEQYCWKGTQKSYKGKKYSVHQGEIQECDDSSNSKPLSGKKFLVADDNQMLRKIAMATLRSLGVTTIDQCENGVEAVRLVEEGLSKDFSNPPYDYILMDCQMPEMDGFEATRQIREMEKRCGLHIPIIALSAEIDKLTTETGMDFHITKPIKKEHLLKAITCIENSDIM 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04464 1100 CDD REC_hyHK_CKI1_RcsC-like 973 1091 - -
Trre1g04464 1100 PRINTS Bacterial sensor protein C-terminal signature 594 608 IPR004358 GO:0016310|GO:0016772
Trre1g04464 1100 PRINTS Bacterial sensor protein C-terminal signature 628 646 IPR004358 GO:0016310|GO:0016772
Trre1g04464 1100 PRINTS Bacterial sensor protein C-terminal signature 612 622 IPR004358 GO:0016310|GO:0016772
Trre1g04464 1100 SMART REC_2 971 1091 IPR001789 GO:0000160
Trre1g04464 1100 Pfam Response regulator receiver domain 974 1091 IPR001789 GO:0000160
Trre1g04464 1100 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 512 669 IPR003594 -
Trre1g04464 1100 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 451 665 IPR036890 -
Trre1g04464 1100 Gene3D - 949 1097 - -
Trre1g04464 1100 Gene3D - 464 675 IPR036890 -
Trre1g04464 1100 PANTHER TWO-COMPONENT HISTIDINE KINASE 57 1091 - -
Trre1g04464 1100 SMART HisKA_10 389 462 IPR003661 GO:0000155|GO:0007165
Trre1g04464 1100 ProSiteProfiles Response regulatory domain profile. 972 1095 IPR001789 GO:0000160
Trre1g04464 1100 ProSiteProfiles Histidine kinase domain profile. 396 670 IPR005467 -
Trre1g04464 1100 Gene3D - 372 463 - -
Trre1g04464 1100 SMART HKATPase_4 512 670 IPR003594 -
Trre1g04464 1100 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 377 464 IPR036097 GO:0000155|GO:0007165
Trre1g04464 1100 SUPERFAMILY CheY-like 969 1093 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04464 Trre-Chr1 50507607 50514107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04464 5 1084 Histidine Kinase Gene Family AT2G47430 38.638 0.0 680
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre1g04464 HATPase_c 7.5e-26 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04464 - - mtr:11417449 1278.08