Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04460 ATGGCGTCGATTCAACAACGACCTGTAAGTTCAGGATCGGACGGCGGAGATCTACAAATTGACGAGAGGAAGAGAAAGAGAATGTTATCTAACCGTGAATCCGCGAAACGATCGAGGATGAGAAAACAGAAACAGATTGAAGATTTGACTGAAGAAGCTGGTAGATTGCAAATCGAGAATGATCGTGTGGCGAAGAGGATAAAAGCGACGGAAGATGCTTATGTGGAGATGGAAGCTGCGAATAATGTTATCAGAGCACAGACTATGGAATTGGCTGAACGATTACGGTTTCTGAATTCGGTTATTGATGTTGCTGAAGATGTTAACGGTTTTTCTATTGAAATGGCTATGATTCCTGATCCTTTACTTAAACCTTGGTTCATACCGCATTATTATTCAGCATCACATGATATGTTGCTGCGTTGA 426 0.4155 MASIQQRPVSSGSDGGDLQIDERKRKRMLSNRESAKRSRMRKQKQIEDLTEEAGRLQIENDRVAKRIKATEDAYVEMEAANNVIRAQTMELAERLRFLNSVIDVAEDVNGFSIEMAMIPDPLLKPWFIPHYYSASHDMLLR 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04460 141 CDD bZIP_plant_GBF1 24 74 IPR045314 GO:0003700|GO:0006355
Trre1g04460 141 Coils Coil 32 66 - -
Trre1g04460 141 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 26 41 IPR004827 GO:0003700|GO:0006355
Trre1g04460 141 Gene3D - 21 78 - -
Trre1g04460 141 SMART brlzneu 19 83 IPR004827 GO:0003700|GO:0006355
Trre1g04460 141 FunFam BZIP transcription factor 21 72 - -
Trre1g04460 141 Pfam bZIP transcription factor 23 80 IPR004827 GO:0003700|GO:0006355
Trre1g04460 141 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 21 84 IPR004827 GO:0003700|GO:0006355
Trre1g04460 141 SUPERFAMILY Leucine zipper domain 23 77 IPR046347 GO:0003700|GO:0006355
Trre1g04460 141 PANTHER BZIP TRANSCRIPTION FACTOR 44 10 105 - -
Trre1g04460 141 MobiDBLite consensus disorder prediction 1 46 - -
Trre1g04460 141 MobiDBLite consensus disorder prediction 17 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04460 Trre-Chr1 50470016 50470441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04460 21 139 bZIP Transcription Factor Family AT3G62420 47.541 5.04e-35 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre1g04460 bZIP_1 8.3e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04460 K25786 - gmx:780550 172.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04816 13 54810472 54810912 Trre1g04460 1 50470016 50470441 PCT