Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04456 ATGGTGTCAAAACCTACCGATTCTCCTCTCCTACTTCATCAATCATTACATGAAGAACCAGCTAATGATGTTGTTGAAACCTTGACCAACAAGATAAATCAGTTGAAAAAGCAAATCCAAGCAGAGAGAATTGAATTCATTAGTGAAAAACTTCAGAGGAACCAGAAGAAGCTACAATGCCATACTTCAGGAATAATGTCAGAAGTATCAACCAGGGACTCTTCACAGGCAGAGGAAAATCGGACATATTCAATTCTTTCTTCAAGAATGGACCATCCTCTATGTCAATTCAATGGTTTTACACTGGGTTCAGGAGACAAAAACCACAGCAATCAGGACATATCTGCTACAAGCATCAAGATTCCTCGTGTTGAAAGATTGCCACCATATACATCTTGGATATTTTTGGACAGGAATCAGAGAATGGCCGACGATCAGTCAGTTGTTGGAAGAAGACGGATCTATTATGATCAACGTGGAAGTGAAGCGTTGATATGCAGTGACAGTGAAGAAGAATTAACAGAACCTGAGGGAGAAAAACATGAATTCTGTGAGGCTGAAGACCGTATTTTATGGATGGCATTTGAGGAACATGGGTTAAATGAGGAGGTATTGAATGTTGTTAGCAAGCATGTTGAGGGGACGAATGTAGAAATCCAGGAGAGGTACAAAAGTATCAGGGAAAATAATATTGGTAGGTTGGACCAGCATTCAAAAAGCTCAGGAGAGCATGAATCTCCTATGAGCATGAATCTAGAGAAAAACCTGAGCGATGCATTAGATTCTCTTGATAACCTTTTCTGTCGCCGGTGCCTGATTTTTGACTGTCGACTGCATGGCTGTTCTCAACCTTTGATATATCCCAGTGAAAAGAAGACAGTTTGGTCTGAGCCTGAAGGTGATAGAAAACCATGTGGTGGTCAGTGTTACCTTCAGTTAAAGGTTGTCAAAAGTTGGTCAAAAGATTCAACTCCCGGGTCTTCTCGGAAAACTACAATTGTAGAGGAGACAGATGGGATATTAGCACCATCCAGCTCAGAAGAACCTGGCAATCAGAGTAGTACTACACTTCCAACAAGAGTCGATTGTCATGGATATCTCAATTTAAATGACCCTGTCTCAGATAGTTTGGGGAAACGGAAGGTCACAAATCAGTCAGACACAGCACAATGTGACTCAAGACTGCCTCCTGATTCTCAGAATTCTTGTAAAAAGCTGAAGAGAATCTCAGATGTTGTTACTGTAATTAGTGATGATAGCAAGAACTTAAATTTGGGTGGATGTGATGAAAATAAACATATAAATACTTGTGAAATTTTAGACAAATCCATTGAACATACTTCGGATAAACCAATAGCTCCTTCTAGCACTTGCCATGATGAGCATGACAAAGGTGTTGTGGATGGATCAAAAGCTGTCACAAATGAGACAGAACTTAAAAATTCGTTGAGTTCAATGAAAGAACAAATTGATGGAATGCTTGGTTTCTCATATTGGAAACCTCTAGAGAAAGAGTTATACTTGAAGGGAGTGGAAATGTTTGGCAGAAACAGTTGCCTCATAGCTAGGAACTTACTTTCTGGTTTGAAGACTTGCATGGAAATATCTAGTTACATGCACGATGGAGGAGTGTCAATGCCCTACAGGTCTATTATTGCAGCTAATTCAATCATGAATGCCAGCGGGAAAATTGACACAGAGTGCACAGACCAAGACATGCCATCTAGGTCACGGTTGCTGAGAAAGAGAGGCAAAACAAGGAAGTTTAAATATTCTTGGAAGTCTGCTGGTCACCCAACAATATGGAAAAGAATTGCTGATGGGAAAAACCAATCTTGCAAGCAGTATATTCCATGTGACTGTCAATCAATGTGTGGAAAGGAATGTTCTTGTCTTAGCAATGGAACATGCTGTGAAAAGTATTGTGGTTGTTCAAAAAGCTGCAAAAACCGGTTCCGAGGATGCCATTGTGCCAAGAGTCAATGCAGAAGTCGACAATGTCCATGCTTTGCTGCTGGACGTGAATGTGATCCAGACGTCTGTCGAAATTGTTGGGTTAGCTGTGGGGATGGTACATTGGGGGAGCCACCGCGGCGTGGACAAGGTCAATGTGGAAATATGAGACTTCTTTTAAGGCAACAACAAAGGATTATCTTGGGGAAGTCTGATGTTGCAGGATGGGGAGCCTTCTTAAAGAATCCTGTTAACAAAAATGACTACCTAGGAGAGTACACGGGTGAGCTGATCTCGCACAGAGAAGCTGATAAGCGTGGGAAAATATATGATCGAGCGAATTCATCTTTTCTTTTCGATTTGAATGAGCAGTATGTTCTTGATGCTTATCGGAAAGGAGACAAGTTGAAATTTGCAAACCACTCATCAAATCCCAATTGCTATGCAAAGGTGATTTTGGTTGCTGGAGATCATCGAGTTGGCATATTCGCCAAGGAACACATTGATGCAAGTGAGGAGCTCTTCTATGATTATTGTTATGGTCCAGATCAAGCTCCTCCATGGGCTCGTAAACCTGAGGGTTCCAAGAGAGACGAATCAGCAGTTCCACAAGGTAGAGCAAAGAAACACCAATCCCATTGA 2595 0.4131 MVSKPTDSPLLLHQSLHEEPANDVVETLTNKINQLKKQIQAERIEFISEKLQRNQKKLQCHTSGIMSEVSTRDSSQAEENRTYSILSSRMDHPLCQFNGFTLGSGDKNHSNQDISATSIKIPRVERLPPYTSWIFLDRNQRMADDQSVVGRRRIYYDQRGSEALICSDSEEELTEPEGEKHEFCEAEDRILWMAFEEHGLNEEVLNVVSKHVEGTNVEIQERYKSIRENNIGRLDQHSKSSGEHESPMSMNLEKNLSDALDSLDNLFCRRCLIFDCRLHGCSQPLIYPSEKKTVWSEPEGDRKPCGGQCYLQLKVVKSWSKDSTPGSSRKTTIVEETDGILAPSSSEEPGNQSSTTLPTRVDCHGYLNLNDPVSDSLGKRKVTNQSDTAQCDSRLPPDSQNSCKKLKRISDVVTVISDDSKNLNLGGCDENKHINTCEILDKSIEHTSDKPIAPSSTCHDEHDKGVVDGSKAVTNETELKNSLSSMKEQIDGMLGFSYWKPLEKELYLKGVEMFGRNSCLIARNLLSGLKTCMEISSYMHDGGVSMPYRSIIAANSIMNASGKIDTECTDQDMPSRSRLLRKRGKTRKFKYSWKSAGHPTIWKRIADGKNQSCKQYIPCDCQSMCGKECSCLSNGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGTLGEPPRRGQGQCGNMRLLLRQQQRIILGKSDVAGWGAFLKNPVNKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNEQYVLDAYRKGDKLKFANHSSNPNCYAKVILVAGDHRVGIFAKEHIDASEELFYDYCYGPDQAPPWARKPEGSKRDESAVPQGRAKKHQSH 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04456 864 MobiDBLite consensus disorder prediction 344 361 - -
Trre1g04456 864 MobiDBLite consensus disorder prediction 841 857 - -
Trre1g04456 864 Pfam SET domain 726 829 IPR001214 GO:0005515
Trre1g04456 864 MobiDBLite consensus disorder prediction 836 864 - -
Trre1g04456 864 MobiDBLite consensus disorder prediction 230 249 - -
Trre1g04456 864 Coils Coil 25 45 - -
Trre1g04456 864 SMART CXC_2 650 687 IPR033467 -
Trre1g04456 864 MobiDBLite consensus disorder prediction 320 334 - -
Trre1g04456 864 MobiDBLite consensus disorder prediction 377 399 - -
Trre1g04456 864 Pfam CXC domain 654 685 IPR041355 -
Trre1g04456 864 CDD SET_EZH 715 831 - -
Trre1g04456 864 SMART set_7 715 836 IPR001214 GO:0005515
Trre1g04456 864 SUPERFAMILY SET domain 587 835 IPR046341 -
Trre1g04456 864 ProSiteProfiles CXC domain profile. 602 701 IPR026489 -
Trre1g04456 864 ProSiteProfiles SET domain profile. 715 830 IPR001214 GO:0005515
Trre1g04456 864 Gene3D SET domain 616 831 IPR046341 -
Trre1g04456 864 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 19 864 IPR025778 GO:0031519
Trre1g04456 864 FunFam Putative histone-lysine N-methyltransferase EZH2 616 832 - -
Trre1g04456 864 MobiDBLite consensus disorder prediction 320 399 - -
Trre1g04456 864 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 23 863 IPR045318 GO:0006338|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04456 Trre-Chr1 50441337 50450017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04456 704 833 C2H2 Transcription Factor Family AT2G23740 25.170 4.22e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre1g04456 SET 5.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04456 - - gmx:100808730 1371.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04456 1 50441337 50450017 Trre1g04456 1 50441337 50450017 ECH
Trre13g04821 13 54844278 54849776 Trre1g04456 1 50441337 50450017 PCT