Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04452 ATGTATTCCATTGCTGATTCAATTCCTTCTGTTATGGTTCATCCACCATTGTCCCCTTATCTTTCCAGTTGTTGTAAAAACGACACGGTGTTGAAACGAGGTAGCGAGGGCTGCCATTGTGTTTATCCTATAAAGTTAGACCTTCTTCTTTTGAACGTCTCTCAAAATCCCGACTGGAATCTTTTTCTTGATGAATTGGCCGCACAGTTGGAGCTGCAGGCTACCCAAATTGAACTGATAAACTTTTATGTACACGGTGTGTCGACATTGAATATATCGATGTATATCACTCCGCAAAAAGAGATCAGTTTCTCTGCCAAGGAAGCATCTAAAATAAACTCTTCCCTTTTATTTCATAAGGTTCAACTAGACAGTAGATTCGTGGATGACTACAGGGTTCTCAATTTGACCTGGTTTAAACCTCCACCTCCTTCTCAAGCTCCTACTTTTGCTGCTTCAACAGTGAAAACTCCTGAGAGACGAGAACCTACAGCAACATCATCGAGTACTTCAGACAGGGGAAGGAATTCAAATTTGGTTGTTATCCTTGGAATTGTTATGGGGATACTCATCATTTCGATTATATGTGTACTTATACTTTGTTTATGCACGCTGAGGCCAAAGACGAAAACACCTCCTATAGAAACTGAAAAGCCAAGAATAGATTATGCAATTTCATCTGTTGTTGGGTCACTTTCACATCCAACAAGTACACGTTTTATTTCTTATGAAGATCTTAGAGAAGCAACAAACAATTTTGAACCGGCAAGCATACTTGGAGAAGGAGGTTTTGGTAAAGTTTTTAAAGGTGTCTTGAATGATGGAACTGCTGTTGCGATTAAGAGGCTTACTAGTGGAGGGCAGCAGGGTGACAAAGAGTTTTTGGTCGAGGTTGAGATGCTTAGCCGGTTGCATCACCGTAACCTTGTAAAACTAGTTGGATACTATAGTAATCGTGACTCATCACAAAACCTACTTTGCTATGAGCTTGTCCCAAATGGAAGTTTGGAGGCCTGGCTTCATGGTCCCTTGGGAATAAATTGCCCTTTGGATTGGGACACCAGGATGAAGATTGCTCTTGATGCTGCAAGAGGACTTTCTTACCTGCATGAAGATTCACAGCCATGTGTCATACACAGAGATTTCAAGGCATCTAATATATTGCTTGAGAACAACTTTCACGCTAAAGTTGCTGATTTTGGTCTAGCTAAACTAGCACCTGAAGGCAGAGCTAATTACCTGTCTACTCGAGTCATGGGCACATTTGGGTATGTAGCACCTGAGTATGCTATGACTGGACACCTACTCGTTAAAAGCGACGTTTATAGCTATGGGGTTGTCTTGCTAGAACTGTTGACCGGAAGGAAACCTGTGGATATGTCACATCCAACTGGACAAGAGAACCTTGTGACTTGGGCTAGGCCAATTCTTAGAGATAAGGAGCGGTTAGAAGAACTTGCTGATCCAAGGGTTGGGGGAAGGTATCCGAAAGAAGATTTTGTCCGTATTTGCACTATCGCTGCAGCCTGTGTTGCACCTGAAGCAAGCCAACGACCTACAATGGGTGAAGTAGTACAGTCACTTAAAATGGTGCAGCGCATCACAGAAAATCATGATCCTGCATTACGGACATCCATTACAAAGCCTAACATGAGACAGTCCTCTACCACCTATGATTCTGACGGATCATCTTCAATGTGTTCTTCTGGTCCTCACTCTGGTCTAAGTGCCTTTGACTATGACAACATTTCTAGGACAGCTGTTTTCTCTGAAGATCTTCATGAAGGACGGTGA 1794 0.4242 MYSIADSIPSVMVHPPLSPYLSSCCKNDTVLKRGSEGCHCVYPIKLDLLLLNVSQNPDWNLFLDELAAQLELQATQIELINFYVHGVSTLNISMYITPQKEISFSAKEASKINSSLLFHKVQLDSRFVDDYRVLNLTWFKPPPPSQAPTFAASTVKTPERREPTATSSSTSDRGRNSNLVVILGIVMGILIISIICVLILCLCTLRPKTKTPPIETEKPRIDYAISSVVGSLSHPTSTRFISYEDLREATNNFEPASILGEGGFGKVFKGVLNDGTAVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSNRDSSQNLLCYELVPNGSLEAWLHGPLGINCPLDWDTRMKIALDAARGLSYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKLAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSHPTGQENLVTWARPILRDKERLEELADPRVGGRYPKEDFVRICTIAAACVAPEASQRPTMGEVVQSLKMVQRITENHDPALRTSITKPNMRQSSTTYDSDGSSSMCSSGPHSGLSAFDYDNISRTAVFSEDLHEGR 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04452 597 Gene3D Phosphorylase Kinase; domain 1 223 330 - -
Trre1g04452 597 CDD STKc_IRAK 259 529 - -
Trre1g04452 597 MobiDBLite consensus disorder prediction 149 173 - -
Trre1g04452 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 377 389 IPR008271 GO:0004672|GO:0006468
Trre1g04452 597 Pfam Protein tyrosine and serine/threonine kinase 257 528 IPR001245 GO:0004672|GO:0006468
Trre1g04452 597 ProSiteProfiles Protein kinase domain profile. 253 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04452 597 Gene3D Transferase(Phosphotransferase) domain 1 331 550 - -
Trre1g04452 597 SUPERFAMILY Protein kinase-like (PK-like) 229 530 IPR011009 -
Trre1g04452 597 MobiDBLite consensus disorder prediction 146 173 - -
Trre1g04452 597 ProSitePatterns Protein kinases ATP-binding region signature. 259 281 IPR017441 GO:0005524
Trre1g04452 597 FunFam Receptor-like serine/threonine-protein kinase ALE2 233 330 - -
Trre1g04452 597 FunFam Receptor-like serine/threonine-protein kinase ALE2 331 548 - -
Trre1g04452 597 MobiDBLite consensus disorder prediction 543 571 - -
Trre1g04452 597 PANTHER OS01G0750732 PROTEIN 22 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04452 Trre-Chr1 50414344 50418175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04452 8 597 Receptor kinase-like Gene Family AT4G02010 72.128 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Trre1g04452 PK_Tyr_Ser-Thr 1.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04452 - - gmx:100792818 966.452