Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04437 ATGGGTGTGAAGAGTGAGGAAGATGTTAATATTGAATCTTCATCTTTGTTAAACAATTATCAATTTTCAAGCGTATTTGATTTTTGTGAGGTAGAAAAAAACTCTCCTTTAGGGTTTATGGAATTACTGGGTGTTCAAGATTATAATCCTCTGCTTGATGTAACCATGTCTATGAAAACTACTACAGTTATGGCTTCATCTGATACTGGAAAAGACTCTTCTGAGGTTTTGAACCAACAACAACAACCTGCAACTCCTAACTCTTGTTCGATTTCATCGGCATCTAGTGAAGCTGTTAATGATAATAAGCTTGTTGTTGAACAAACTGAAGATGATGATGATGAAGGAGATGCAGAAGAAAAGCACCAAAAGACCAATAAACAGTTGAAGACGAAGAAAACAAATCAAAAGAAACAGAGAGAACCAAGATTTGCTTTCATGACAAAAAGTGAAGTGGATCATTTAGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTAAAAAACAGCCCCTTTCCAAGGAGCTACTATCGTTGCACCACTGTTTCATGTAATGTGAAGAAACGTGTAGAACGTTCTTTTACTAATCCAAGTATTGTAGTCACAACTTATGAAGGCCAACACACTCATCCAAGTCCAGCTATGTCGCGTTCCGCCTTCATCGGAGCTCAAATAGCACCACCGGCCGGTTTAGTCTCCGGTGGATTTCCTACTAACTATGGCTCAGTTTTGCAAGGAAACTACTTATCATCATCATCATCACCACAGTATCATCAACAACATCAACATCAACAACTACTTGTTAATACATTGTCCTCTATGAATCATCCTTATTACAATTCTTCAGATTTTACTCAAGAGAGAAAGCTTTGTAATCAAGTGACAACTTCTGCATTTCTTAGGGATCATGGACTTCTTCAAGATGTTGTTCCTTCACATATGTTGAAAGAAGAGTAG 963 0.3759 MGVKSEEDVNIESSSLLNNYQFSSVFDFCEVEKNSPLGFMELLGVQDYNPLLDVTMSMKTTTVMASSDTGKDSSEVLNQQQQPATPNSCSISSASSEAVNDNKLVVEQTEDDDDEGDAEEKHQKTNKQLKTKKTNQKKQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTVSCNVKKRVERSFTNPSIVVTTYEGQHTHPSPAMSRSAFIGAQIAPPAGLVSGGFPTNYGSVLQGNYLSSSSSPQYHQQHQHQQLLVNTLSSMNHPYYNSSDFTQERKLCNQVTTSAFLRDHGLLQDVVPSHMLKEE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04437 320 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 66 265 IPR044810 GO:0003700
Trre1g04437 320 Coils Coil 119 139 - -
Trre1g04437 320 PIRSF WRKY_txn_fact_IIc 1 320 IPR017396 GO:0003700
Trre1g04437 320 FunFam WRKY transcription factor 57 141 215 - -
Trre1g04437 320 ProSiteProfiles WRKY domain profile. 150 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g04437 320 SUPERFAMILY WRKY DNA-binding domain 147 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre1g04437 320 Gene3D WRKY domain 140 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre1g04437 320 MobiDBLite consensus disorder prediction 63 103 - -
Trre1g04437 320 MobiDBLite consensus disorder prediction 63 140 - -
Trre1g04437 320 SMART WRKY_cls 155 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g04437 320 Pfam WRKY DNA -binding domain 156 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04437 Trre-Chr1 50301547 50303047 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04437 24 320 WRKY Transcription Factor Family AT2G47260 48.810 2.60e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre1g04437 WRKY 5.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04437 - - gmx:732591 356.295