Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04436 ATGGAGAAGAAAGAGATGGGTGTGAAGAGTGAGGAAGATGTTAATATTGAATCTTCATCTTTGTTAAACAATTATCAATTTTCAAGCGTATTTGATTTTTGTGAGGTAGAAAAAAACTCTCCTTTAGGGTTTATGGAATTACTGGGTGTTCAAGATTATAATCCTCTGCTTGATGTAACCATGTCTATGAAAACTACTACAGTTATGGCTTCATCTGATACTGGAAAAGACTCTTCTGAGGTTTTGAACCAACAACAACAACCTGCAACTCCTAACTCTTGTTCGATTTCATCGGCATCTAGTGAAGCTGTTAATGATAATAAGCTTGTTGTTGAACAAACTGAAGATGATGATGATGAAGGAGATGCAGAAGAAAAGCACCAAAAGACCAATAAACAGTTGAAGACGAAGAAAACAAATCAAAAGAAACAGAGAGAACCAAGATTTGCTTTCATGACAAAAAGTGAAGTGGATCATTTAGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTAAAAAACAGCCCCTTTCCAAGGAGCTACTATCGTTGCACCACTGTTTCATGTAATGTGAAGAAACGTGTAGAACGTTCTTTTACTAATCCAAGTATTGTAGTCACAACTTATGAAGGCCAACACACTCATCCAAGTCCAGCTATGTCGCGTTCCGCCTTCATCGGAGCTCAAATAGCACCACCGGCCGGTTTAGTCTCCGGTGGATTTCCTACTAACTATGGCTCAGTTTTGCAAGGAAACTACTTATCATCATCATCATCACCACAGTATCATCAACAACATCAACATCAACAACTACTTGTTAATACATTGTCCTCTATGAATCATCCTTATTACAATTCTTCAGATTTTACTCAAGAGAGAAAGCTTTGTAATCAAGTGACAACTTCTGCATTTCTTAGGGATCATGGACTTCTTCAAGATGTTGTTCCTTCACATATGTTGAAAGAAGAGTAG 978 0.3763 MEKKEMGVKSEEDVNIESSSLLNNYQFSSVFDFCEVEKNSPLGFMELLGVQDYNPLLDVTMSMKTTTVMASSDTGKDSSEVLNQQQQPATPNSCSISSASSEAVNDNKLVVEQTEDDDDEGDAEEKHQKTNKQLKTKKTNQKKQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTVSCNVKKRVERSFTNPSIVVTTYEGQHTHPSPAMSRSAFIGAQIAPPAGLVSGGFPTNYGSVLQGNYLSSSSSPQYHQQHQHQQLLVNTLSSMNHPYYNSSDFTQERKLCNQVTTSAFLRDHGLLQDVVPSHMLKEE 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04436 325 MobiDBLite consensus disorder prediction 68 145 - -
Trre1g04436 325 SMART WRKY_cls 160 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g04436 325 MobiDBLite consensus disorder prediction 68 108 - -
Trre1g04436 325 Gene3D WRKY domain 145 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre1g04436 325 ProSiteProfiles WRKY domain profile. 155 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g04436 325 SUPERFAMILY WRKY DNA-binding domain 152 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre1g04436 325 FunFam WRKY transcription factor 57 146 220 - -
Trre1g04436 325 Coils Coil 124 144 - -
Trre1g04436 325 Pfam WRKY DNA -binding domain 161 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre1g04436 325 PIRSF WRKY_txn_fact_IIc 1 325 IPR017396 GO:0003700
Trre1g04436 325 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 71 270 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04436 Trre-Chr1 50301547 50303062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04436 29 325 WRKY Transcription Factor Family AT2G47260 48.810 2.30e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre1g04436 WRKY 5.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04436 - - gmx:732591 365.925