Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04430 ATGATTGATAGCATCACAGTGTTGTTCTTTTTATGTTCCTACATGAGAACAAGCACTTCACTTGATAGTTTATCTATGAATCAATCCATCAAAGATGGTGAAACATTAGTTTCAGCTAATGGAACTTTTGAAATGGGTTTCTTCAGTCCTGGAAATTCAAAAGGTCGTTATTTGGGTATGTGGTACAAAAAGTTAACCCCTTTAACGGTTCTATGGGTGGCTAATAGGGAAACACCAGTGTACAATAACTCGGGAGTCTTAAAACTCAGTGAAATCGGCGTTGTCGTTCTCAATGGAGAAAACACCACTGTTTGGTCCTCCAACATGTCAAACAAAGTCGTTGTCAATAATTCAATAACTGCTCAGTTCTTGGAAACTGGGAATCTTGTGTTGAAAAATAGGAAGGGCAATATTGTGTGGCAGAGTTTTGATTATCCAACTGATACACTTATGCCGGGAATGAAGATTGGATGGAACTTTGTAACTGGACTAAACAAGATGCAAACATCGTGGAAGAGTGCAGATGATCCTGCAAAGGGAGAATATACTAGTGCTGTTGACCCTAGAGGATATCCCCAAGTAGCTATTTTGAAGGGATCTGTCATAAAATTGAGAATAGGATCATGGAACGGACGTGCTTTTACTGGATATCCAACACCGCCATTGAAAGAAAAGGAAAAATTTGAATTTGTCATAACTGACAAAGAAGTGTATCATAGTTTTGAAGTTGTTGATAGCTCTATTATTTGCTTATACAAATTATCCATTTTAGGACATTTGCAGGCTTTATGTTGGACAAGTCAATCAAGCTCGAGGATAATTATCTACACCGGCGCAGAAGATTCGTGTGATAATTATGCTATGTGTGGTGCTAATTCTATATGTAATATGGATGGTAACGTTCCTCAATGTGAATGCCTGAAAAGCTATGTTCCTAAATTTCCTGAACAATGGAATATATCGTATTGGTCTGGTGGTTGTATTCCAAAAAATATATCGGTTTGTGGAAACAATAACACAAGTGGATTCTTCAGGTACAGAGAAATGAAATTGCCAGACACGTCTTCATCACGCTATAATAAGACTATGAATCTTGTGGAATGTCAGAAGACATGTATCAAAAATTGTTCGTGTACAGGTTATGCAAATCTGGATATCCGAAATGGAGGAAGCGGTTGTCTTCTTTGGTTTGGTGATCTGGTTGACATGAGAGTAATCTCCCAATGGGGACAAGACCTCTATATCAGAGTACCTTCTTCAGAACTAGACTACCTTAGTGTTGATGCCCTTCAAAGCAAGAAAAAGAAGCTGATGCGGATCATACTTGTATTGATTACTGTTGGATTTTTTGTATGTGCCTGCATAATGATATTTATCAGGAGAGCGGCACAGAGAGGATACAGTCTTGCACCATTTCAAAAGCGGAAACTATATTGTAGATTGAGAAAGGAAGACATGGATCTTCCAATATTTGATTTTTCAGTTCTTGTTAAAGTCACTAAGAACTTTTCTAGCGTAAATAAAATCGGGGAAGGAGGATTTGGACCGGTGTATAAGGGTACGCTCGTAGAAGGGAAGGAGGTAGCCATAAAACGGCACTCAAAAGTGTCAGATCAAGGATTGGAAGAGTTTAAAAATGAAATTGTGTTGATTGCAAAACTTCAGCACCGTAATCTTGTGAAGCTTCTTGGTTGCTCTAGTCATGAAGAGGAAATGTTGTTGATATATGAATACATGCCCAACAAGAGCTTAGACTACTTTATCTTTGATGAATCGAGAAGCGAGCTCTTGGGCTGGACTCACCGTTCTAACATTATTGTTGGCATTGCTAAAGGACTTCTTTATCTTCACCAAGACTCTAGACTCAGAATTATTCATAGAGATTTGAAAACGAGCAATATCCTGTTAGATGCCCATATGAATCCAAAAATCTCAGATTTTGGCTTGGCTAGGCTATTTGGGGGAGATCAAATTGAAGCCAAAACAAGAAAACTGGTTGGGACCTATGGTTACATGCCTCCAGAGTATGCTGTACATGGTCGTTACTCTATGAAATCAGATGTGTTTAGTTTTGGCGTAATAATATTAGAGATAATCAGTGGGAAGAGGATCAAGGCCTTTTATGACCCAACACACTCTCTCAACCTTCTTGGATATGCTTGGAGACTCTGGATTGAAAACATGCCATTGGAACTACTAGATCCACATTTACTTGATATGTGCATTTCTTCTGAAGTCATACGATGCATACATGTGGGGTTATTATGCGTACAACAAAAACCCGATGATAGGCCATGCATGTCCTCTGTCATTCTTATGTTGAATGGTGAGAAATTGTTGCCTCAACCAAAGGCTCCTGCATTTTATACTGGCCAAGTTTCAAGTGAAACCCCATCCTCTTCCTCAAATCATATGTCATTTACAATTTTTGAGCCAAGATAG 2442 0.3866 MIDSITVLFFLCSYMRTSTSLDSLSMNQSIKDGETLVSANGTFEMGFFSPGNSKGRYLGMWYKKLTPLTVLWVANRETPVYNNSGVLKLSEIGVVVLNGENTTVWSSNMSNKVVVNNSITAQFLETGNLVLKNRKGNIVWQSFDYPTDTLMPGMKIGWNFVTGLNKMQTSWKSADDPAKGEYTSAVDPRGYPQVAILKGSVIKLRIGSWNGRAFTGYPTPPLKEKEKFEFVITDKEVYHSFEVVDSSIICLYKLSILGHLQALCWTSQSSSRIIIYTGAEDSCDNYAMCGANSICNMDGNVPQCECLKSYVPKFPEQWNISYWSGGCIPKNISVCGNNNTSGFFRYREMKLPDTSSSRYNKTMNLVECQKTCIKNCSCTGYANLDIRNGGSGCLLWFGDLVDMRVISQWGQDLYIRVPSSELDYLSVDALQSKKKKLMRIILVLITVGFFVCACIMIFIRRAAQRGYSLAPFQKRKLYCRLRKEDMDLPIFDFSVLVKVTKNFSSVNKIGEGGFGPVYKGTLVEGKEVAIKRHSKVSDQGLEEFKNEIVLIAKLQHRNLVKLLGCSSHEEEMLLIYEYMPNKSLDYFIFDESRSELLGWTHRSNIIVGIAKGLLYLHQDSRLRIIHRDLKTSNILLDAHMNPKISDFGLARLFGGDQIEAKTRKLVGTYGYMPPEYAVHGRYSMKSDVFSFGVIILEIISGKRIKAFYDPTHSLNLLGYAWRLWIENMPLELLDPHLLDMCISSEVIRCIHVGLLCVQQKPDDRPCMSSVILMLNGEKLLPQPKAPAFYTGQVSSETPSSSSNHMSFTIFEPR 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04430 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 334 417 - -
Trre1g04430 813 ProSiteProfiles PAN/Apple domain profile. 335 418 IPR003609 -
Trre1g04430 813 Gene3D Transferase(Phosphotransferase) domain 1 579 782 - -
Trre1g04430 813 Pfam S-locus glycoprotein domain 205 314 IPR000858 GO:0048544
Trre1g04430 813 PIRSF SRK 1 812 IPR024171 GO:0004674
Trre1g04430 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 470 578 - -
Trre1g04430 813 SMART serkin_6 503 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04430 813 SMART ntp_6 338 417 IPR003609 -
Trre1g04430 813 CDD STKc_IRAK 509 776 - -
Trre1g04430 813 ProSiteProfiles Protein kinase domain profile. 503 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04430 813 ProSiteProfiles Bulb-type lectin domain profile. 21 144 IPR001480 -
Trre1g04430 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 177 IPR036426 -
Trre1g04430 813 MobiDBLite consensus disorder prediction 794 813 - -
Trre1g04430 813 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 764 - -
Trre1g04430 813 CDD PAN_AP_plant 335 418 - -
Trre1g04430 813 SUPERFAMILY Protein kinase-like (PK-like) 486 804 IPR011009 -
Trre1g04430 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 579 782 - -
Trre1g04430 813 CDD B_lectin 27 146 IPR001480 -
Trre1g04430 813 Pfam PAN-like domain 335 403 IPR003609 -
Trre1g04430 813 Pfam D-mannose binding lectin 69 172 IPR001480 -
Trre1g04430 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 16 143 - -
Trre1g04430 813 SMART blect_4 27 146 IPR001480 -
Trre1g04430 813 Gene3D Phosphorylase Kinase; domain 1 470 578 - -
Trre1g04430 813 Gene3D Hepatocyte Growth Factor 334 414 - -
Trre1g04430 813 Pfam Protein kinase domain 504 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04430 813 Gene3D - 16 143 IPR036426 -
Trre1g04430 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04430 Trre-Chr1 50267405 50270683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04430 440 788 Receptor kinase-like Gene Family AT4G23230 52.260 5.97e-123 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g04430 Pkinase 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04430 - - aprc:113865090 1075.85