Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04415 ATGGATGTGAAAGAAATACTCGGATTGCCCCAAATTTCCTTCCCAGTTCAGGAGAAGAATTCTCAATCTCATAATCAGGAGGTTTATGCACTTAAGGGTGGATTGGCACCTCTTATACCTACAGTTGATTTGTCTCTGTTGAATAAAAGACCTCCATCAAACCAAAAGGTCATTTGGCAATGGCTTCCTTTCAAAAATTCTGCTCGCAAAGATGATCTTCAGCTTTACCATTGGGTTCAGGTTTTAAATGGTGTTCCACCAACAGAGGACTATTCTTTTGCCAAGTATAACAAGTCTGCTGAGATAACAAGATACACAGACGAGGAGTATGAGAAATATTTGGCAAATCCTAAATGGACCAAGGAGGAAACGGATCAGTTGTTTGAGTTGTGTGAGAGATTTAATCTCCGATTTATTGTTATAGCTGATAGATTTCCCTCATCTCGAACTGTTGAAGAATTAAAGGATCGATACTATAGTGTTTCCCGGGCAATATTAATTGCTAGGAATCCATCTTCTGGGGATGTTGCAGTGCATCCGCTTGTTAAGGAACCATACAACGTTTCACACGAGATGGAACGGAAAAGAGCTATGTCCCTGGTGCTCTCTCAAACAAGGCAACAAGAGCGAAGAGATGAAGAGGTGCTTGCCGAAGCAAAAAGAATTGCTGAGTTACGCTTAATGACCAAGGTTGCTGAAGAGGCTGAGTTGGTTGTTACTTCAAATGCTGGAGAAAACGTTACAGAGAGGCTCGACCCCAGCGAAACTGTATCTCCATCAAATTTGCAACTCCCACCGATAGTTGTGCCTTCCACAATAACAGCATATAATGCATCTACTGTAGCTTCTCTCCGCATGCTTCATGTGTATTTAAGAACCTACTCACTTGAACAAATGGTGCAATCTGCAAGCTCATCAGCTGGACTTCGGACTATCAAACGTGTTGATCAAACTTTGCAGGAACTTGGGGTCAATTTGAAACCAAGGGTTCCAACAAAAGCTGTTTGTGCAGAGCATCTTGAACTAAGAAATGAAATACTAACTCTGCTGAATCTTCAGAAACAGCTGCAAAATAAGGAGGCTGAAGGTTCCTCTTTTCGTGACGGGTCACACTGTGAAACAATAGGAACACCAAAGCGTTCACATCGTGGTGGAGACCAGGATCGGACATTTGTTCCAGATAACACAAGTTCTGGAGGGGAAAGAATTGGTAAAAGGGATCAAAAGCGCAAGGCATCTGGACGACATTCAGAAGTTCCGTCATCACTGGCCCAATCGAAAAGACCGAAAAAACTATAG 1299 0.4242 MDVKEILGLPQISFPVQEKNSQSHNQEVYALKGGLAPLIPTVDLSLLNKRPPSNQKVIWQWLPFKNSARKDDLQLYHWVQVLNGVPPTEDYSFAKYNKSAEITRYTDEEYEKYLANPKWTKEETDQLFELCERFNLRFIVIADRFPSSRTVEELKDRYYSVSRAILIARNPSSGDVAVHPLVKEPYNVSHEMERKRAMSLVLSQTRQQERRDEEVLAEAKRIAELRLMTKVAEEAELVVTSNAGENVTERLDPSETVSPSNLQLPPIVVPSTITAYNASTVASLRMLHVYLRTYSLEQMVQSASSSAGLRTIKRVDQTLQELGVNLKPRVPTKAVCAEHLELRNEILTLLNLQKQLQNKEAEGSSFRDGSHCETIGTPKRSHRGGDQDRTFVPDNTSSGGERIGKRDQKRKASGRHSEVPSSLAQSKRPKKL 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04415 432 FunFam DNA methyltransferase 1-associated protein 1 87 174 - -
Trre1g04415 432 Gene3D - 87 174 - -
Trre1g04415 432 MobiDBLite consensus disorder prediction 373 389 - -
Trre1g04415 432 CDD SANT_DMAP1_like 119 161 - -
Trre1g04415 432 Pfam DNA methyltransferase 1-associated protein 1 (DMAP1) 305 368 IPR008468 GO:0005634|GO:0045892
Trre1g04415 432 MobiDBLite consensus disorder prediction 400 416 - -
Trre1g04415 432 Coils Coil 342 362 - -
Trre1g04415 432 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 17 418 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Trre1g04415 432 SMART sant 115 164 IPR001005 -
Trre1g04415 432 MobiDBLite consensus disorder prediction 361 432 - -
Trre1g04415 432 SUPERFAMILY Homeodomain-like 116 165 IPR009057 -
Trre1g04415 432 Pfam SANT/Myb-like domain of DAMP1 91 165 IPR032563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04415 Trre-Chr1 50149841 50156171 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre1g04415 DMAP1 3.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04415 K11324 - cave:132170322 621.313