Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04408 ATGAAGAGTTACCAGAAAAAGACCATACTGGAAAAGAAATATCGGAATGTGAGTGCCATTGGGCAGGGTCTTGATTTGAAGCTGAAGCAAGCTGAGAGTAAGAAAATTAGAGTGACTGTTAGCCAAAAGGGTGCTGCTGATTTTAAGAGCATTACAGAAGCTATTAATAGCATTTCACCACACAATACTAGAAGAGTTATTTTGTTGATTGCGCCTGGTGTTTATAGGGAGAAAATTGTGATCCCCAAAACATTGCCTTTCATAACATTCTTAGGGGATGCAAGGAATCGGCCAACTATTACCGGAAATGATACAGCGTCTGTTACAGGAAGCGATGGTTCTCTGTTGAGGACATTCAATAGTGCGACCGTTGCTGTGAATGCTAGCTATTTTATAGCCATCAACATTAAATTTGAGAACACTGCTTATATTCCCAATGGATCGGAAGTAGACCAAGCTGTTGCGCTTCGCGTCACCGGAACCAAAGCTGCTTTTTACAATTGCTCATTTTATGGGGTTCAAGACACATTATATGATCACAAAGGCCTTCACTACTTCAAAAATTGCTTTATTCAAGGCTCGGTTGATTTCATCTTCGGCTATGGGAGGTCCCTTTATGAGGGTTGCACTATAAACTCCATAACCAAGAACATGACCTCCATCACAGCTCAAAAGCGTTCGAGTTCGTCATTAGATAGTGGATTTTCCTTTAAAAATAGCACGGTAACCGGTAGTGGGCAAGTTTACCTTGGAAGACCATGGGGAGATTATTCAAGAGTCGTTTTCTCTTACACTTTCATGGACAAGATTGTTCTCCCCAAAGGATGGAAAGATTGGGAAGACCAAAAGCGCTTCATGAATGTATATTATGGAGAATACAAGTGTAGCGGGCCTGGATCCAACTTCACTGGAAGAGTTCCATGGGCACGGATACTAACGGACGAAGAGGCCCAACCTTTTATTGGAATCCATTTCATTGAAGGGGAGACTTGGCTTATTAGCCCCTAA 1008 0.4196 MKSYQKKTILEKKYRNVSAIGQGLDLKLKQAESKKIRVTVSQKGAADFKSITEAINSISPHNTRRVILLIAPGVYREKIVIPKTLPFITFLGDARNRPTITGNDTASVTGSDGSLLRTFNSATVAVNASYFIAINIKFENTAYIPNGSEVDQAVALRVTGTKAAFYNCSFYGVQDTLYDHKGLHYFKNCFIQGSVDFIFGYGRSLYEGCTINSITKNMTSITAQKRSSSSLDSGFSFKNSTVTGSGQVYLGRPWGDYSRVVFSYTFMDKIVLPKGWKDWEDQKRFMNVYYGEYKCSGPGSNFTGRVPWARILTDEEAQPFIGIHFIEGETWLISP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04408 335 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 29 332 - -
Trre1g04408 335 Pfam Pectinesterase 38 328 IPR000070 GO:0030599|GO:0042545
Trre1g04408 335 SUPERFAMILY Pectin lyase-like 36 332 IPR011050 -
Trre1g04408 335 FunFam Pectinesterase 33 334 - -
Trre1g04408 335 ProSitePatterns Pectinesterase signature 2. 191 200 IPR033131 -
Trre1g04408 335 Gene3D - 32 334 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04408 Trre-Chr1 50033176 50035057 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04408 38 332 Carbohydrate Esterase AT5G47500 46.465 1.65e-93 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04408 K01051 - pvy:116132618 486.108