Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04407 ATGGAGTCTGATTTTGAGAATTGGATATCATGGAACATGAAGAGTTACCAGAAAAAGACCATACTGGAAAAGAAATATCGGAATGTGAGTGCCATTGGGCAGGGTCTTGATTTGAAGCTGAAGCAAGCTGAGAGTAAGAAAATTAGAGTGACTGTTAGCCAAAAGGGTGCTGCTGATTTTAAGAGCATTACAGAAGCTATTAATAGCATTTCACCACACAATACTAGAAGAGTTATTTTGTTGATTGCGCCTGGTGTTTATAGGGAGAAAATTGTGATCCCCAAAACATTGCCTTTCATAACATTCTTAGGGGATGCAAGGAATCGGCCAACTATTACCGGAAATGATACAGCGTCTGTTACAGGAAGCGATGGTTCTCTGTTGAGGACATTCAATAGTGCGACCGTTGCTGTGAATGCTAGCTATTTTATAGCCATCAACATTAAATTTGAGAACACTGCTTATATTCCCAATGGATCGGAAGTAGACCAAGCTGTTGCGCTTCGCGTCACCGGAACCAAAGCTGCTTTTTACAATTGCTCATTTTATGGGGTTCAAGACACATTATATGATCACAAAGGCCTTCACTACTTCAAAAATTGCTTTATTCAAGGCTCGGTTGATTTCATCTTCGGCTATGGGAGGTCCCTTTATGAGGGTTGCACTATAAACTCCATAACCAAGAACATGACCTCCATCACAGCTCAAAAGCGTTCGAGTTCGTCATTAGATAGTGGATTTTCCTTTAAAAATAGCACGGTAACCGGTAGTGGGCAAGTTTACCTTGGAAGACCATGGGGAGATTATTCAAGAGTCGTTTTCTCTTACACTTTCATGGACAAGATTGTTCTCCCCAAAGGATGGAAAGATTGGGAAGACCAAAAGCGCTTCATGAATGTATATTATGGAGAATACAAGTGTAGCGGGCCTGGATCCAACTTCACTGGAAGAGTTCCATGGGCACGGATACTAACGGACGAAGAGGCCCAACCTTTTATTGGAATCCATTTCATTGAAGGGGAGACTTGGCTTATTAGCCCCTAA 1044 0.4176 MESDFENWISWNMKSYQKKTILEKKYRNVSAIGQGLDLKLKQAESKKIRVTVSQKGAADFKSITEAINSISPHNTRRVILLIAPGVYREKIVIPKTLPFITFLGDARNRPTITGNDTASVTGSDGSLLRTFNSATVAVNASYFIAINIKFENTAYIPNGSEVDQAVALRVTGTKAAFYNCSFYGVQDTLYDHKGLHYFKNCFIQGSVDFIFGYGRSLYEGCTINSITKNMTSITAQKRSSSSLDSGFSFKNSTVTGSGQVYLGRPWGDYSRVVFSYTFMDKIVLPKGWKDWEDQKRFMNVYYGEYKCSGPGSNFTGRVPWARILTDEEAQPFIGIHFIEGETWLISP 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04407 347 ProSitePatterns Pectinesterase signature 2. 203 212 IPR033131 -
Trre1g04407 347 Gene3D - 42 346 IPR012334 -
Trre1g04407 347 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 40 344 - -
Trre1g04407 347 Pfam Pectinesterase 50 340 IPR000070 GO:0030599|GO:0042545
Trre1g04407 347 FunFam Pectinesterase 44 346 - -
Trre1g04407 347 SUPERFAMILY Pectin lyase-like 48 344 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04407 Trre-Chr1 50033140 50035057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04407 50 344 Carbohydrate Esterase AT5G47500 46.465 2.07e-93 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04407 K01051 - pvy:116132618 501.13