Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04406 ATGGATACCAATTACAAAACCAATATTCATGTAATGAGGAGTTTATCAGATTGTGGTTCATCAGAAGCAAATGTAAGTGAAGAAGATATTATGGTGATAAAGAAAGGTCCATGGACAGAGGAGGAGGATGCTGTTCTGATGAACTATGTGGCGGTTCATGGCGAAGGTCACTGGAATTCTGTCGCTCGCTGTTCGGGTCTAAAGCGAACTGGGAAAAGTTGTAGACTAAGATGGTTGAACTACTTACGTCCGAATGTTCGACGTGGGAATATCACTCTTCAAGAACAGATCTTGATTCTTGATCTCCATTCGCGTTGGGGCAACCGGTGGTCTAAAATAGCGGAACAATTGCCAGGAAGAACAGACAATGAGATAAAGAACTACTGGAGGACGAGAGTGGTGAAGCAAGCTAGACAACTCAAATGTGATGTAAACAGCAAAGAGTTTAGGGACATGTTGCGTTATGAATGGATTCCACGTCTCCTTGAAAGGATTCAATCTACTTGCGCAACTGCAGATACTAATTTCTATGGCCAGACACAAACCACGAATTGCAATAATACTAAAGCTCACAGTGACACTTGTGGTGCAAATGCAAATCCTCCCATGTTGTCGTCTGAGGTTTCATCGTACTCCTCAGAGGTTGATGTTTTAGTAGAATCAAACGTATCTAATAATTACAATTTAATGGATAGTGTGGAATTCGGATCCACGTGGCAGGAGTGGAATTGCTTAGACTCAAACATACAAGGATTTGAACAGAACAATGGTTTTTTTGGTGGTTCAGAATTATGGACAGATGAAAACATATGGTTCTTGCAGCAACAACTTGCAGATGATTTATGA 846 0.4102 MDTNYKTNIHVMRSLSDCGSSEANVSEEDIMVIKKGPWTEEEDAVLMNYVAVHGEGHWNSVARCSGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQILILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKQARQLKCDVNSKEFRDMLRYEWIPRLLERIQSTCATADTNFYGQTQTTNCNNTKAHSDTCGANANPPMLSSEVSSYSSEVDVLVESNVSNNYNLMDSVEFGSTWQEWNCLDSNIQGFEQNNGFFGGSELWTDENIWFLQQQLADDL 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04406 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 86 IPR017930 -
Trre1g04406 281 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Trre1g04406 281 SMART sant 87 135 IPR001005 -
Trre1g04406 281 SMART sant 34 84 IPR001005 -
Trre1g04406 281 CDD SANT 92 131 IPR001005 -
Trre1g04406 281 Gene3D - 92 133 - -
Trre1g04406 281 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Trre1g04406 281 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Trre1g04406 281 FunFam Myb transcription factor 35 87 - -
Trre1g04406 281 SUPERFAMILY Homeodomain-like 33 129 IPR009057 -
Trre1g04406 281 ProSiteProfiles Myb-like domain profile. 34 82 IPR001005 -
Trre1g04406 281 Gene3D - 34 87 - -
Trre1g04406 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 137 IPR017930 -
Trre1g04406 281 CDD SANT 37 82 IPR001005 -
Trre1g04406 281 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 33 223 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trre1g04406 281 FunFam MYB transcription factor 92 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04406 Trre-Chr1 50022947 50024010 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04406 21 280 MYB Transcription Factor Family AT2G47190 47.842 2.74e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre1g04406 Myb_DNA-binding 2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04406 K09422 - gmx:778040 321.242