Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04401 ATGAGAGGTATGGATATTAAGATTAAGAAAATTGATGAGTCTGCAAAGCTCAACGAATTAAGAAAAGGTCCATGGACGTTAGAAGAGGACACCATTTTGGTTAATTACATTTCAACCCATGGTGAAGGTCACTGGAATACTGTGGCATGTTCTGCAGGTCTTCGGAGAAATGGGAAAAGTTGCCGATTAAGGTGGTTAAACTACTTGCGTCCGGATTTACGCCGTGGAAATATCACACTCCAAGAACAGATTTTGATTCTTGACCTCCACTCTCGTTGGGGCAATAGGTGGTCGAGAATTGCACAACATCTTCCCGGAAGAACAGACAACGAAATAAAAAACTATTGGAGGACTAGAGTGATGAAGCAGGCAAAGCAGCTCAAGTGTGATGTCAATAGCAAACAATTTAGAGATGTCTTGCGCGACGTCTGGATGCCCCGTTTGCTCGAACAGGTTCAACCTGTACTCCAAATCCCTGACCCGAATAACCTGAAACGACCAAATTTCATTCTTCACCAAAAGACGTTGCACAGTTCAGTTTCGGAAACAGAGTGGCCAAAATCAAACAACTCCTCAAGTGCTAGTCCTATTTCCTCGAACTCGTCATCAGTTGAATTTCAAGTTCATCCGAATTCCGAGCTGTTGGGCCATGATGGCTCGAAACTATTATCATGTTTTAATAACCAGGATTCAGAACAGGGGAATAGTAGTGGTGGTGGTGACTCGTTGGAGAATTTGTGGAACGATGATGAGAACATGTGGTTTTTGCAACAACTTTCTGAAGATTTTGAAATAAAATACAATTTCATTGTGTGA 816 0.4203 MRGMDIKIKKIDESAKLNELRKGPWTLEEDTILVNYISTHGEGHWNTVACSAGLRRNGKSCRLRWLNYLRPDLRRGNITLQEQILILDLHSRWGNRWSRIAQHLPGRTDNEIKNYWRTRVMKQAKQLKCDVNSKQFRDVLRDVWMPRLLEQVQPVLQIPDPNNLKRPNFILHQKTLHSSVSETEWPKSNNSSSASPISSNSSSVEFQVHPNSELLGHDGSKLLSCFNNQDSEQGNSSGGGDSLENLWNDDENMWFLQQLSEDFEIKYNFIV 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04401 271 FunFam Myb transcription factor 22 74 - -
Trre1g04401 271 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Trre1g04401 271 SMART sant 74 122 IPR001005 -
Trre1g04401 271 SMART sant 21 71 IPR001005 -
Trre1g04401 271 CDD SANT 24 69 IPR001005 -
Trre1g04401 271 FunFam MYB transcription factor 79 142 - -
Trre1g04401 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Trre1g04401 271 Gene3D - 22 74 - -
Trre1g04401 271 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 18 212 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trre1g04401 271 MobiDBLite consensus disorder prediction 181 203 - -
Trre1g04401 271 Gene3D - 79 120 - -
Trre1g04401 271 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Trre1g04401 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Trre1g04401 271 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Trre1g04401 271 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Trre1g04401 271 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Trre1g04401 271 CDD SANT 79 118 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04401 Trre-Chr1 49889624 49890823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04401 18 257 MYB Transcription Factor Family AT2G47190 49.027 2.18e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre1g04401 Myb_DNA-binding 2.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04401 K09422 - gmx:778065 293.508