Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04396 ATGCATCACAAGACAATCACTATGGCTACGGCCGCCGCCGCCACAATGCAGTGGCCAACTCAGTGGACTCGTGAAGACGTCAAGATAGCTCTTGTGATGGTGCCAGAGGATTTACCTAACCGGTGGGAGAAGATTGCCGAACAAGTTCACGATAAGTCAGCGGCGGAAGTGAGGGATCTCTATGAGGATTTGGTTCATGAAATTTTGGAAATTGAATCTGGTGGGTTGAGACATGCTGATAAGGAGAAGAGGAAGAAGAAAGGAAGATCATGGATTGAAGATGAGCATAAGTTGTTTCTTTATGGGCTTGAGAAATACGGGAAAGGAGATTGGAGAAGCATTTCAAGAAATTTTGTTGTGACGAGAACACCAACTCAATTAGCAATTCATGCTCAGAAGTACTTTAGTCACAACCAGCAAAAGAGTGCAGTAAAAAATAAAAAGCGGACAAGATCAAGTATTCATGACATTGCATTGGGAGATAGTAACTCGGCTCCGGTGCCTATTGATCAAAACTTTGTAACAACACCGGGAGAAGGAACAAACTTTTGA 552 0.433 MHHKTITMATAAAATMQWPTQWTREDVKIALVMVPEDLPNRWEKIAEQVHDKSAAEVRDLYEDLVHEILEIESGGLRHADKEKRKKKGRSWIEDEHKLFLYGLEKYGKGDWRSISRNFVVTRTPTQLAIHAQKYFSHNQQKSAVKNKKRTRSSIHDIALGDSNSAPVPIDQNFVTTPGEGTNF 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04396 183 ProSiteProfiles Myb-like domain profile. 83 135 IPR001005 -
Trre1g04396 183 FunFam transcription factor MYB1R1 89 140 - -
Trre1g04396 183 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 167 IPR043363 -
Trre1g04396 183 ProSiteProfiles Myb-like domain profile. 22 65 IPR001005 -
Trre1g04396 183 SMART sant 18 67 IPR001005 -
Trre1g04396 183 SMART sant 87 137 IPR001005 -
Trre1g04396 183 CDD SANT 90 135 IPR001005 -
Trre1g04396 183 Gene3D - 89 140 - -
Trre1g04396 183 SUPERFAMILY Homeodomain-like 20 72 IPR009057 -
Trre1g04396 183 NCBIfam myb-like DNA-binding domain, SHAQKYF class 86 137 IPR006447 GO:0003677
Trre1g04396 183 SUPERFAMILY Homeodomain-like 84 139 IPR009057 -
Trre1g04396 183 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 139 IPR017930 -
Trre1g04396 183 Pfam Myb-like DNA-binding domain 90 135 IPR001005 -
Trre1g04396 183 Gene3D - 17 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04396 Trre-Chr1 49857246 49857977 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre1g04396 Myb_DNA-binding 1.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04396 - - tpra:123883408 192.971