Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04382 ATGATGGCAACTGCGGGTGTAGCACCTGCTTCTGGATTAATAGATGTAAATGCAAGTTCAGTTTCTGCTGCTGATAAGTTACCGGATGAGATTCTCGGTATGAAAATTAAGGATGATAAGGAAATGGAAGCACATGTGGTAGATGGAAATAGTACTGAAGCAGGACATGTAATTGTCACTACAATTGGTGGTAAAAATGGCCAACCAAAGCAGACAATAAGCTACATGGCTGAGCGTGCTGTTGGACAGGGATCATTCGGTGTAGTTTTCCAGGCAAAATGCTTGGAGACAGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGGTACAAGAACCGAGAATTGCAAACAATGCGCCTTCTTGACCACCCTAATGTCGTAACTTTGAAGCATTGTTTCTTTTCGACAACTGAAAAAGATGAGCTCTATCTTAACTTGGTACTTGAGTATGTTCCCGAGACTGTCCATCGTGTGATCAGACACTACACCAAAATGAATCAGAGGATGCCAATGATATATGTAAAACTTTATTCTTACCAGATATGTAGATCACTAGCTTACATTCATAACTGTGTTGGAGTGTCTCATAGAGACATAAAACCTCAAAATTTACTGGTCAATCCTCACACCCACCAGCTGAAGCTTTGTGACTTTGGGAGTGCAAAAGTCCTGGTCAAAGGTGAACCAAATATATCTTACATATGTTCTAGGTATTATAGAGCTCCTGAGCTTATATTTGGTGCAACTGAGTACACCACAGCCATCGACATTTGGTCAGCTGGTTGTGTACTTGGCGAACTATTGCTCGGCCAGCCTCTCTTTCCCGGTGCAAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGGTTTTAGGTACCCCAACAAGGGAAGAGATAAAGTGTATGAATCCTAATTACACCGAATTCAAATTCCCACAAATCAAAGCTCATCCATGGCACAAGATCTTTCGCAAGCGTATGCCACCAGAAGCTGTGGATCTCGTCTCAAGATTACTCCAATACTCTCCAAATCTTCGATGCACAGCCTTGGAGGCCATGGTTCATCCATTCTTTGATGAATTGCGTGATCCAAACACCCGCTTACCTAATGGCCGTCATCTTCCTCCTTTATTTAACTTCAAAGCCAACGAGCTTAAGGGAGTGCCTGCTGAAATGCTGGTGAAGCTGATTCCGTCTCACGCGAGAAAGCAAAGTCCCTTGTTTGTGTCATAG 1236 0.4272 MMATAGVAPASGLIDVNASSVSAADKLPDEILGMKIKDDKEMEAHVVDGNSTEAGHVIVTTIGGKNGQPKQTISYMAERAVGQGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVTLKHCFFSTTEKDELYLNLVLEYVPETVHRVIRHYTKMNQRMPMIYVKLYSYQICRSLAYIHNCVGVSHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGASGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFRKRMPPEAVDLVSRLLQYSPNLRCTALEAMVHPFFDELRDPNTRLPNGRHLPPLFNFKANELKGVPAEMLVKLIPSHARKQSPLFVS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04382 411 CDD STKc_GSK3 70 362 IPR039192 -
Trre1g04382 411 FunFam Shaggy-related protein kinase kappa 155 403 - -
Trre1g04382 411 SMART serkin_6 75 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04382 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Trre1g04382 411 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 39 405 - -
Trre1g04382 411 ProSiteProfiles Protein kinase domain profile. 75 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04382 411 ProSitePatterns Protein kinases ATP-binding region signature. 81 105 IPR017441 GO:0005524
Trre1g04382 411 Gene3D Transferase(Phosphotransferase) domain 1 155 403 - -
Trre1g04382 411 Pfam Protein kinase domain 75 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04382 411 Gene3D Phosphorylase Kinase; domain 1 59 154 - -
Trre1g04382 411 SUPERFAMILY Protein kinase-like (PK-like) 74 383 IPR011009 -
Trre1g04382 411 FunFam Glycogen synthase kinase-3 beta 59 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04382 Trre-Chr1 49649408 49652056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04382 81 362 Core Cell Cycle Gene Families AT1G76540 35.172 2.31e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Trre1g04382 Pkinase 5.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04382 K00924 - gmx:100788046 772.696