Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04379 ATGGTGGCTGAAGCAGAGGTTGTGTGTCAACAAAGCGTGGATGTGTTAGATGTGAAGTATTTTCCGAATAAAGGAAGCAATATTCATGAGATCGGTGATGGAGATGTTATCTCGCCATCGAATTTTGAGAAAGTTAGAGTTTCTGAATCAGTTTCTGCTGAGTTACTTACTTCAAAAGAAGATGTTAAGACTGCAGACGTAATCTCAGAAGCTGCTCTTGAATCTGCAGTTCTGCAATTCGTCCCCTGCATCCGTTCTGGTAGTTTTGCTGACATTGGTCCGCGTAGATACATGGAAGATGAACATATAAGAATAGATGACTTGTCGTCTAATCTGGGATCACTATATAATTTTCCTAAACCAAGTGCCTTTTATGGGGTGTTTGATGGCCATGGAGGACCTGAAGCTGCAGCTTATATAAGAAAAAATGTTATAAAATTCTTCTTTGAAGATGTCAATTTCCCACAGACATCTGAAGTTGATAACATATTTTTACAAGAGGTGGAGAATTCCCTCAGAAAGGCTTTTCTTTTGGCAGATTCAGCTTTGGCTGATGATTGCAGTGTAAACACCTCATCAGGGACCACAGCTCTTACTGCTATGATATTTGGAAGGCTTCTAATGGTGGCAAATGCTGGTGACTGTCGAGCAGTTCTCAGTCGTAAAGGAGAGGCCATTGATATGTCTCAAGATCACCGACCTATTTATCCATCAGAACGGAGGCGAGTTGAAGAATTGGGTGGTTACGTAGAGGATGGTTATCTTAATGGCGTTTTATCAGTTACGAGAGCACTAGGGGACTGGGACATGAAGTTACCTAGGGGTGCTCCCTCACCTTTGATTGCAGAGCCTGAGTTCCGCCAAATGGTTCTAACAGAGGACGACGAATTCCTCATCATTGGATGCGACGGCATCTGGGATGTGATGACAAGCCAGCATGCTGTTAGCCTTGTTCGTAAAGGTTTGAGGAGGCATGATGATCCAGAGAAATGCGCCAGGGACCTAGTTATGGAGGCATTACGCCTCAACACATTCGACAATCTGACAGTGATCATTGTCTGTCTCTCTTCACTTGACCATGGGGAGTCAGAGTCATCACCACCTCCCCAGCGGAAATTGAGATGCTGTAGTCTCTCTGCAGAGGCTCTTTGTAGCTTGAGAAACTTGTTGGAAGGAAGTGCTAGCAACTGA 1191 0.4408 MVAEAEVVCQQSVDVLDVKYFPNKGSNIHEIGDGDVISPSNFEKVRVSESVSAELLTSKEDVKTADVISEAALESAVLQFVPCIRSGSFADIGPRRYMEDEHIRIDDLSSNLGSLYNFPKPSAFYGVFDGHGGPEAAAYIRKNVIKFFFEDVNFPQTSEVDNIFLQEVENSLRKAFLLADSALADDCSVNTSSGTTALTAMIFGRLLMVANAGDCRAVLSRKGEAIDMSQDHRPIYPSERRRVEELGGYVEDGYLNGVLSVTRALGDWDMKLPRGAPSPLIAEPEFRQMVLTEDDEFLIIGCDGIWDVMTSQHAVSLVRKGLRRHDDPEKCARDLVMEALRLNTFDNLTVIIVCLSSLDHGESESSPPPQRKLRCCSLSAEALCSLRNLLEGSASN 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04379 396 SMART PP2C_4 75 353 IPR001932 -
Trre1g04379 396 ProSiteProfiles PPM-type phosphatase domain profile. 85 355 IPR001932 -
Trre1g04379 396 CDD PP2Cc 84 355 IPR001932 -
Trre1g04379 396 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169
Trre1g04379 396 SUPERFAMILY PP2C-like 79 357 IPR036457 -
Trre1g04379 396 PANTHER PROTEIN PHOSPHATASE 2C 69 353 IPR015655 GO:0004722|GO:0006470
Trre1g04379 396 Gene3D - 72 361 IPR036457 -
Trre1g04379 396 FunFam Probable protein phosphatase 2C 22 69 358 - -
Trre1g04379 396 Pfam Protein phosphatase 2C 95 347 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04379 Trre-Chr1 49614220 49616545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04379 98 392 PP2C-type Phosphatase Gene Family AT3G62260 70.608 6.13e-156 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04379 K14803 - gmx:100819791 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04379 1 49614220 49616545 Trre1g04379 1 49614220 49616545 ECH