Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04376 ATGGTTAGAATGCATGCAACACTCTGTACCTTGGTTCTAATTATTCTCTCAGTTTCAACATTGACATCATCAACATCTTTGGAGTTTGGTTTCTATAAGACAACATGTCCATCCGCTGAGGCAATTGTAAGAAGAGCTGTAAACAAAGCCGTTTCACTCAACCCGGGGATCGCTGCTGGTTTGATTAGATTGCATTTTCATGATTGTTTTGTTAGGGGATGCGATGGTTCTGTATTATTAGAAACTACACCAGGTAACCCATCTGAGAAAGACCATCCTGCAAACAATCCAAGTTTACGCGGCTTCGAGGTCATCAATGAAGCTAAGGCACAAATAGAAGCTGCATGTCCCAAAACGGTGTCTTGTGCAGATATTCTTGCTTTTGCGGCTCGGGACAGTACTCGCAAAGTTAGTGGCGGCATATACTACTCAGTACCATCAGGACGCAGAGATGGTCGAGTCTCTATCTTCAACGAAGTCACACAAAATCTACTACCACCATCTACCGAAGCGGAGAAACTTATCAGTCATTTTGGTACAAAAGGGTTGTCAGCAGATGAAATGGTTACACTTTCTGGAGCTCATTCTATTGGTGTCTCACATTGTTCATCTTTCTCAAACCGATTATACTCTTTCAATGCCACATTTTCTCAAGATCCATCTATGGACCCTAAGTTCGCTATGTTCTTGAAATCCAAGTGTCCACCACCACAATCTCAGTCACAGGTACAGGTACAAAACATAGACCCAACAGTGGTGTTTGATGGTTCCACACCTAATGATTTGGACAACAAGTACTATATGAGGTTGAAGAATCACCGCGGTTTATTAACATCGGATCAAACATTGTTTGATAGTGACTTAACTAGACAAATGGTGTTAAGAAATGCCAGACATGCTGCAATCTGGAGAGTGAAGTTTGCTAAGGCTATGGTGCACATGGGTTCCATAGATGTGTTGACAGGTTCTCAAGGTGAGATTAGGGAGCGATGCAGCGTTGTTAATTCTTATTAA 1014 0.4201 MVRMHATLCTLVLIILSVSTLTSSTSLEFGFYKTTCPSAEAIVRRAVNKAVSLNPGIAAGLIRLHFHDCFVRGCDGSVLLETTPGNPSEKDHPANNPSLRGFEVINEAKAQIEAACPKTVSCADILAFAARDSTRKVSGGIYYSVPSGRRDGRVSIFNEVTQNLLPPSTEAEKLISHFGTKGLSADEMVTLSGAHSIGVSHCSSFSNRLYSFNATFSQDPSMDPKFAMFLKSKCPPPQSQSQVQVQNIDPTVVFDGSTPNDLDNKYYMRLKNHRGLLTSDQTLFDSDLTRQMVLRNARHAAIWRVKFAKAMVHMGSIDVLTGSQGEIRERCSVVNSY 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04376 337 PRINTS Plant peroxidase signature 253 268 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g04376 337 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g04376 337 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g04376 337 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g04376 337 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g04376 337 PRINTS Plant peroxidase signature 309 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g04376 337 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g04376 337 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g04376 337 PRINTS Plant peroxidase signature 269 286 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g04376 337 Pfam Peroxidase 43 298 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre1g04376 337 Gene3D Peroxidase, domain 2 165 314 - -
Trre1g04376 337 FunFam Peroxidase 165 314 - -
Trre1g04376 337 PANTHER PEROXIDASE 25-RELATED 15 323 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre1g04376 337 CDD secretory_peroxidase 29 334 IPR033905 GO:0004601|GO:0042744
Trre1g04376 337 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Trre1g04376 337 ProSiteProfiles Plant heme peroxidase family profile. 26 335 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre1g04376 337 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre1g04376 337 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre1g04376 337 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre1g04376 337 PRINTS Haem peroxidase superfamily signature 255 270 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre1g04376 337 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre1g04376 337 Gene3D - 30 335 - -
Trre1g04376 337 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Trre1g04376 337 SUPERFAMILY Heme-dependent peroxidases 27 335 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trre1g04376 337 FunFam Peroxidase 30 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04376 Trre-Chr1 49604658 49605671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04376 1 335 Peroxidase AT4G11290 43.155 9.05e-86 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04376 K00430 - gmx:100790188 445.662