Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04372 ATGATCAACATGAAAAACATTAGTCTTTTTACACTCTTGAGTTTCAATCGTGGACAAGCATGGCTCATTTTGTCACTTGTTATTACTCTCGTACAAATCTTACCGTTGATGACCGGTCAACCACTCGGACCAGAAGATCCAACGGAGAACAACAAATCAGTAGCAACCATCATTGAAATTGTAGCCATTATGATCCTCTTCTCCGGTTTCCTTTCTCTATATTCATCCAAATGCGGTGATCGTCAACGAGGGGTTATTTTCGACCTCAGTTTACCTACCGGTGGAAGCGGTCTTCGGGCACAAAACAATGAGCCAAGTAACGGTCTCAACCAAGATGTTATCGACACATTTCCTACTTTTCGCTACTCCAATGTGAAGGGACTCAAGATTGGAAAAAGCACTTTGGCTTGTGCTGTTTGCTTGAATGAGTTTCAAGATGATGAAACATTGCGTTTAATCCCTAAATGTAGCCATGTGTACCATCATGGTTGCATTGATATTTGGCTTGTTTCTCATAATACATGCCCGGTTTGTCGTGCTAACCTTGATCCAAGATCTGAAGATACTATCGTGCCTCCAAATATAACCATTCAGATACCAGAAGGAGAATTACATCATAATGAGGATGTAGAACATGATATTCAAGAGGAACAAAAGAGAGACAACATTGAAGTGGAATATTCAACAAAGGTAAATTTACTTCGTAGGTCTCACACATATTGTGCATCAACACGATCAAAATCTACAGGATTCTTATCTGTTATCTTGTTATCACGATCGAATTCAACGGGTGTGTTGGTGCAACCAGGTGAGGACTGTGAGAGGTTTACATTGAGGTTACCTGATGCAGTACGACATCAAATGATGATTAATACAACAACGCATAAGCGTGCAAAAAGTTGTGTGAGTTTTACCAGAATGAGCAGTGGCACATGTGGTTATAGGTCAAAAAGTGTTGGGTGTGGAAGCGGGTGGGGTCACATGCATTACAAAAGGTTTGGAAGTGAGGAGGAAGAGAACTTAGGGTTCGCTAGAAATAGTTGGAATAATAAATCCATTAGAAAATCTCCGCTAAAGAGTTTGGAAGTTAATTTGAACAATTATGAAGGTGAGCTATCGTCTGATCTTTTGTTTCCTGTGTAG 1143 0.4016 MINMKNISLFTLLSFNRGQAWLILSLVITLVQILPLMTGQPLGPEDPTENNKSVATIIEIVAIMILFSGFLSLYSSKCGDRQRGVIFDLSLPTGGSGLRAQNNEPSNGLNQDVIDTFPTFRYSNVKGLKIGKSTLACAVCLNEFQDDETLRLIPKCSHVYHHGCIDIWLVSHNTCPVCRANLDPRSEDTIVPPNITIQIPEGELHHNEDVEHDIQEEQKRDNIEVEYSTKVNLLRRSHTYCASTRSKSTGFLSVILLSRSNSTGVLVQPGEDCERFTLRLPDAVRHQMMINTTTHKRAKSCVSFTRMSSGTCGYRSKSVGCGSGWGHMHYKRFGSEEEENLGFARNSWNNKSIRKSPLKSLEVNLNNYEGELSSDLLFPV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04372 380 SMART ring_2 137 178 IPR001841 -
Trre1g04372 380 SUPERFAMILY RING/U-box 131 185 - -
Trre1g04372 380 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Trre1g04372 380 Pfam Ring finger domain 136 179 IPR001841 -
Trre1g04372 380 FunFam E3 ubiquitin-protein ligase ATL6 98 185 - -
Trre1g04372 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 44 297 - -
Trre1g04372 380 CDD RING-H2_EL5-like 137 179 - -
Trre1g04372 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 185 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04372 Trre-Chr1 49586554 49587696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04372 23 289 Rapid Response to Elicitors AT3G05200 40.074 3.13e-50 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04372 K10664 - gmx:100814384 336.265