Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04371 ATGGAGGCTAGATTGGGTGGTGAAGGTTATCATTTTTATGGTGTTGGTGGTTCATCTGAATTGACTAGTATGGGAAAGAGGTCAAGAGAGTGGAATTTGAATGATTGGAGATGGGATGGTGATTTGTTTTTAGCTAGCCGTGTGAATCCGGTGCCGGCGGAAGGTATGAGAGTAGGTCAACAGTTTTTCCCTCTCGGGTCTGGGATCTCGGTGGCTGGGGGTTCGTCCAACACCTCTTCTTCATGCTCTGAGGAAGGAGATCTAGAGAATAATAAAAGAGATAAGGAAGGGGAGAAGAAAAGGAGAGTTATTGTGTTGGAAGAAGATGGTTTGAATGAGGAAGCTGGTGCTCTTAGCTTAAATCTTGCTGGACATGCTTCGCCGGTGGTGGAAAGGGAGATTGCAACATGGGATGGTGTGAATGGGAAAAAAGGGAGAGTAGCTGGAGGTACTCCGAATCGAGCTGTTTGTCAGGTTGAAGACTGTGGTGCAGATCTGAGTAGAGGTAAGGATTATCACAGACGTCATAAGGTCTGTGAGATGCATTCAAAGGCTAGTAGGGCGCTTGTGGGAAACGCAATGCAGAGGTTTTGTCAACAGTGTAGTAGGTTTCACATACTTCAAGAGTTTGATGAAGGAAAGAGAAGCTGTCGGAGACGCTTGGCTGGCCATAATAAACGAAGAAGGAAAACAAATACTGAAGCTGTTCCTAATGGAAGTCCAACAAATGATGATCAGACTAGTAGTTATCTGTTGATAAGTTTGTTGAAGATACTTTCAAATATGCATTCTGACAGGTCAGATCAGATTACAGATCAGGATCTTCTAACTCATCTTCTAAGGAGTCTTGCTAGTCAGAATGATGAACAAGGGATCAGAAACCTTTCAAACCTTTTGCGGGAACAAGAGAATTTGTTGAGAGAAGGGGGTTCTTCTAGGAAGTCAGAGATGGTGTCAGCTTTATTCTCCAATGGTTCTCAAGGCTCTCCAACTGCTGTAACACAACATCAAACTGTATCTATGAATAGAATGCAGGAAGAAATGATGCATCCACATGATGTTAGGACCACTGACCATCAGCTCATATCTTCAGTAAATCCCAGCATTTCAAACAGTCCACCGGCTTACTCAGAAGCCAGAGATAGTAGTGCACAAATAAAGATGAATAATTTTGATTTGAATGACATATATATTGACTCAGATGATGGCACGGAAGATCTAGAAAGATTGCCCGTCTCTACAAATCTTGGCACTAGCTCTGTCGACTACCCATGGGCACAACAAGATTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCTAGCGGAGAAGCTCAGAGTCGCACAGACCGGATTGTTTTTAAACTCTTTGGTAAAGAGCCAAATGAATTTCCACTTGTACTTAAATCACAGATTCTTGATTGGTTATCCCACAGTCCTACCGATATGGAGAGCTACATACGGCCTGGTTGTATTGTTTTGACTATTTATCTGCGTCAGGCTGAGGCTGTGTGGGAGGATCTTTGCTGTGATCTGACTTCCAGTTTGAATAAGCTGCTGGATGTCTCTGATGATACGTTTTGGAGAACTGGATGGGTTCATATCAGGGTGCAGCATCAAATGGCATTCATTTTCGATGGTCAAGTTGTCATTGATACATCACTACCTTTTAGAAGTAACAATTATAGCAAAATTTGTACTGTTAGTCCAATTGCTGTACCAGCATCAAAGAGAGCTCAATTTTCTGTTAAAGGTGTCAACCTGATGCACCCTGCCACGAGGTTAATGTGTGCTTTAGAAGGAAAATATCTGGTCTGTGAAGATGCTCACGAGTCAACGGATCATTACTCGAAGGAGCTTGATGAACTTCAGTGCATCCAATTTTTATGTTCTGTCCCTGTGACGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTCTTTCCTTTCATAGTGGCAGAAGAGGATGTTTGCTCAGAGATCTGTGTGCTTGAGCCTTTACTAGAATTAAGTGAAACTGATCCAGATATTGAAGGGACTGGAAAAATTAAAGATAAAAGTCAAGCTATGGATTTCATTCATGAAATGGGCTGGCTTCTTCACAGAAGCCAATTGAAATATAGGATGGTTCACCTGAACTCTGCTGTAGATCTCTTTCCATTAGAACGGTTCACATGGCTTATGGAGTTTTCCATGGACCATGATTGGTGTGCGGTGGTGAAAAAACTGTTGAACCTACTGCTCGATGAAACTGTGAATAAAGGAGATCACCCTACCCTGTATCAGGCACTTTCAGAGATGGGTCTCCTTCACCGAGCTGTAAGGAAAAATAGCAAGCAGTTAGTGGAGCTGCTTTTGAGATATGTTCCTGACAAGGCACTAGTTGATGGAGATAATCATAGCTTCTTGTTTAGACCTGATGCTGTTGGTCCTGCTGGTTTGACACCCCTCCATATAGCAGCGGGAAAAGATGGTTCCAAAGATGTACTGGAGGCTCTGACTAGTGATCCTTGCATGGTGGGAATTGAAGCATGGAAGAGTGCCCGTGACAGCACAGGCTCCACACCCGAGGATTATGCACGATTACGTGGCCATTATACTTACATTCACTTAGTGCAGAAAAAAATTAACAAGAGACAAGGAGCACCTCATGTGGTGGTTGAGATTCCCAGCAATCCGACAGAGAGCAATACAAACCCGAAGCAAAATGAGTCGTCCACTAGCTTTGAGATTGGAAAAGCTGAAGTAAGACGCAGTCAAGGGAACTGTAAACTTTGTAATACTAAAATTTCTTGTAGAACTGCAGTAGGAAGGTCTATGGTATACAGACCTGCAATGCTCTCCATGGTGGCCATAGCAGCAGTCTGTGTTTGTGTGGCTCTTTTGTTTAAAAGCTCACCTGAAGTTCTGTACATGTTCCGACCATTCAGATGGGAATCATTGGATTTCGGAACAAGCTAA 3012 0.4316 MEARLGGEGYHFYGVGGSSELTSMGKRSREWNLNDWRWDGDLFLASRVNPVPAEGMRVGQQFFPLGSGISVAGGSSNTSSSCSEEGDLENNKRDKEGEKKRRVIVLEEDGLNEEAGALSLNLAGHASPVVEREIATWDGVNGKKGRVAGGTPNRAVCQVEDCGADLSRGKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHILQEFDEGKRSCRRRLAGHNKRRRKTNTEAVPNGSPTNDDQTSSYLLISLLKILSNMHSDRSDQITDQDLLTHLLRSLASQNDEQGIRNLSNLLREQENLLREGGSSRKSEMVSALFSNGSQGSPTAVTQHQTVSMNRMQEEMMHPHDVRTTDHQLISSVNPSISNSPPAYSEARDSSAQIKMNNFDLNDIYIDSDDGTEDLERLPVSTNLGTSSVDYPWAQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNEFPLVLKSQILDWLSHSPTDMESYIRPGCIVLTIYLRQAEAVWEDLCCDLTSSLNKLLDVSDDTFWRTGWVHIRVQHQMAFIFDGQVVIDTSLPFRSNNYSKICTVSPIAVPASKRAQFSVKGVNLMHPATRLMCALEGKYLVCEDAHESTDHYSKELDELQCIQFLCSVPVTNGRGFIEIEDQGLSSSFFPFIVAEEDVCSEICVLEPLLELSETDPDIEGTGKIKDKSQAMDFIHEMGWLLHRSQLKYRMVHLNSAVDLFPLERFTWLMEFSMDHDWCAVVKKLLNLLLDETVNKGDHPTLYQALSEMGLLHRAVRKNSKQLVELLLRYVPDKALVDGDNHSFLFRPDAVGPAGLTPLHIAAGKDGSKDVLEALTSDPCMVGIEAWKSARDSTGSTPEDYARLRGHYTYIHLVQKKINKRQGAPHVVVEIPSNPTESNTNPKQNESSTSFEIGKAEVRRSQGNCKLCNTKISCRTAVGRSMVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYMFRPFRWESLDFGTS 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04371 1003 Gene3D - 148 218 IPR036893 GO:0003677|GO:0005634
Trre1g04371 1003 ProSiteProfiles Zinc finger SBP-type profile. 154 231 IPR004333 GO:0003677
Trre1g04371 1003 FunFam Squamosa promoter-binding-like protein 14 149 218 - -
Trre1g04371 1003 MobiDBLite consensus disorder prediction 906 926 - -
Trre1g04371 1003 Pfam SBP domain 157 230 IPR004333 GO:0003677
Trre1g04371 1003 MobiDBLite consensus disorder prediction 74 97 - -
Trre1g04371 1003 SUPERFAMILY SBT domain 155 235 IPR036893 GO:0003677|GO:0005634
Trre1g04371 1003 SUPERFAMILY Ankyrin repeat 740 888 IPR036770 -
Trre1g04371 1003 Gene3D - 754 903 IPR036770 -
Trre1g04371 1003 MobiDBLite consensus disorder prediction 907 926 - -
Trre1g04371 1003 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 70 890 IPR044817 GO:0003677
Trre1g04371 1003 MobiDBLite consensus disorder prediction 221 246 - -
Trre1g04371 1003 MobiDBLite consensus disorder prediction 418 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04371 Trre-Chr1 49578137 49584204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04371 1 1003 SBP-box Gene Family AT3G60030 55.534 0.0 974
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre1g04371 SBP 1.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04371 - - gmx:100809806 1655.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04371 1 49578137 49584204 Trre1g04371 1 49578137 49584204 ECH