Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04369 ATGAACGGAAAAATACTAGTTTCTGGTGTATCCATCATTCTTGTGGTGGGTGTTGCCATCGGTGTCGTCGTTGTTGTCAACAAAAATGGTAATGATCCTACAGTAGCAGCACATCAAAGAAATGTGCAATCACTTTGTCAAGCAACTGAAGATCAAAAACTTTGTCAAGACACTCTTAGCACTGCGAAACCAACCAATTCCTCTGATCCAACGGCTTATTTAGCAGCTGCGGTTGAAGCAAGTGCGAAAAGTGTTATCGTTGCCTTGAATATGAGTGATAGGTTAAAAGTTGAGCATGACAACGGCGAACCTGGTGTCAAAATGGCACTTGATGATTGCAAAGACTTGATGCAATTCGCTCTTGATAGTCTTGAATCATCGGCTAATTTGGTTCGCGGTAACAATATTCAAGCGATTCATGATCAAACACCTGACTTTAGGAACTGGTTGAGTGCTGTTATCTCGTACCAAGAATCATGCACGGAAGGGTTCAATAATGGGACCGGAGAGGATCAGGTAAAGAAACAGTTGCAAACAGAAAGTTTGGATAAGATGGAGAAGCTAACTGGAATTACACTTGACATTGTAACAAGTATGGTTAAAATCCTTCAGACTTTCGACTTGAAGCTAGATTTGAACCCAGCTTCTCGTCGTCTTCTGGAGGCTAATGAGCTTGACAATGAAGGATTGCCCAAGTGGTTCTCGGCTGCAGATCGTAAGCTATTGGCTAAGATAGGTGGTGGTGGTGGTGGTGGAGCTCCTCCACCAAATGCAGTAGTTGCTAAAGATGGTAGTGGTCAATTTAAAACAGTTAAAGAGGCTATTGACTCATATCCTCCGGGCTTCCAAGGCAGATTCATTATCTACGTTAAGGCCGGAATCTATGACGAGTACATCACCGTTCCCAAAAAATCAGTAAATATTCTTTTGTATGGCGATGGTCCTACAAAGAGTATTATCACCGGTCACAAAAACTTCGTTGATGGCGTCAAAACAATGCAAACTGCCACTTTTGCAAATGTTGCACCCGGATTCATTGCAAAGTCAATAGCATTCGAGAACACAGCTGGATGGGAAAAACATCAAGCAGTGGCATTTAGAAACCAAGGAGATATGTCAGCATTCTTCGACTGCGCCATGCACGGCTACCAAGACACATTATACGTTCAAGCCAATCGTCAATTCTACCGCAACTGTGAAATATCAGGTACCATAGACTTCATATTCGGCGCATCTCCAACCCTAATTCAAAACTCTCGAATCATAGTGCGTAAGCCAGGACCAAGTCAATTCAACACCGTAACCGCAGACGGCACAAAACAAAGAAACATGGCCACAGGAATTGTTCTCCAGAATTGCGAAATCACCGCAGAGAGGGAATTGTTCCCAGTTAAGGACCAATTCAAATCATATTTGGGTAGGCCATGGAAACAATATGCTAAGACAGTGGTTATGGAATCTAACATTGGCGACTTTCTTGCACCGGAAGGATGGACTCCATGGGATGGAGACATGTTTCTCGATACATTGTATTATGCCGAATTTGCTAATTCTGGACCTGGTGCTAATCTTAATGGAAGAGTTAAGTGGAAAGGTTATCATCCAAACATTAATAAGAATGAAGCTGCTCAATTCACTGCAGCAGAATTCCTTAAAGCTGGACCTACTGGAAGAGCTGATGATTGGTTGAAGGCAACTGGTATTCCTTATACAGTTGGATTTGAAAAAGCTTGA 1734 0.425 MNGKILVSGVSIILVVGVAIGVVVVVNKNGNDPTVAAHQRNVQSLCQATEDQKLCQDTLSTAKPTNSSDPTAYLAAAVEASAKSVIVALNMSDRLKVEHDNGEPGVKMALDDCKDLMQFALDSLESSANLVRGNNIQAIHDQTPDFRNWLSAVISYQESCTEGFNNGTGEDQVKKQLQTESLDKMEKLTGITLDIVTSMVKILQTFDLKLDLNPASRRLLEANELDNEGLPKWFSAADRKLLAKIGGGGGGGAPPPNAVVAKDGSGQFKTVKEAIDSYPPGFQGRFIIYVKAGIYDEYITVPKKSVNILLYGDGPTKSIITGHKNFVDGVKTMQTATFANVAPGFIAKSIAFENTAGWEKHQAVAFRNQGDMSAFFDCAMHGYQDTLYVQANRQFYRNCEISGTIDFIFGASPTLIQNSRIIVRKPGPSQFNTVTADGTKQRNMATGIVLQNCEITAERELFPVKDQFKSYLGRPWKQYAKTVVMESNIGDFLAPEGWTPWDGDMFLDTLYYAEFANSGPGANLNGRVKWKGYHPNINKNEAAQFTAAEFLKAGPTGRADDWLKATGIPYTVGFEKA 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04369 577 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 200 IPR035513 -
Trre1g04369 577 Pfam Plant invertase/pectin methylesterase inhibitor 42 195 IPR006501 GO:0004857
Trre1g04369 577 SMART PMEI_2 37 195 IPR006501 GO:0004857
Trre1g04369 577 SUPERFAMILY Pectin lyase-like 253 572 IPR011050 -
Trre1g04369 577 NCBIfam pectinesterase inhibitor domain 32 198 IPR006501 GO:0004857
Trre1g04369 577 FunFam Pectinesterase 253 574 - -
Trre1g04369 577 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Trre1g04369 577 Pfam Pectinesterase 257 552 IPR000070 GO:0030599|GO:0042545
Trre1g04369 577 FunFam Pectinesterase 38 200 - -
Trre1g04369 577 CDD PMEI-like_3 44 201 - -
Trre1g04369 577 Gene3D - 254 574 IPR012334 -
Trre1g04369 577 PANTHER PECTINESTERASE 18 564 - -
Trre1g04369 577 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 199 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04369 Trre-Chr1 49534106 49535928 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04369 4 574 Carbohydrate Esterase AT3G05610 39.483 3.80e-138 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04369 K01051 - gmx:100775246 882.093