Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04367 ATGGAAAGTAAAGTACTTGTTTCAGCTGTTTCTCTTATTCTTGTAGTAGGTGTTGCCTTAGGCGTTGTTGCTCTTGTTCGAACCTCGGACAAACCCGGTGATAATGGTCCCGAATTGAATGCACATACCAAAGCTGTTCAAGCTGTGTGTCAAGGTAGTGATGATAAAAAATTTTGTGTTGATACTCTTAATCCTGTTAATACTTCAGACCCAAATGATTACATAAAAACCGTGGTTAAAACTTCTATGGAAGGTGTCATCAAAGCCTTCAACATGAGCGATAAGCTCGCAGTTGAAAATCACAAAGATAACTCGACTATTAAAATGGCGCTCGATGATTGTAAAGATTTGTTACAATCCGCGATTCAAGAATTACAAGCCTCGGAAGTTTTAATGCATGATACCAATACTCAGAACGTTCATGATCGTACCGCGGAGCTCAAAAACTGGTTAGGTGCTGTTATTGCTTACCAACAATCGTGTCTTGACGGTTTTGATACCGATGGTGAAAAAAAGGTTCAGTCGCAGTTGCAGACAGGTAGTTTGGATGATGTAGAAAAACTTACGGCCTTAGCACTTGATGTTGTGTCTGCGGTTTCGAAAGTACTTGCTGCATTTGACTTGGATTTGGATGTGAAAACTTCGTCTCGTAGACTTTTTGAAGCCGGTGAAGAGGGTTATCCAGAATGGATGTCTGCTGCTGATCGTAAGCTAATGGCTGATATGAGTACCGGAATGGGCGCTGCTACGCCTAATGCGGTTGTTGCCAAAGATGGTAGTGGTCAATTTAATACGGTACTAGATGCTATTAATTCTTATCCGAAAAAACATGTAGGTAGATTTGTTATCTACGTGAAGGCCGGTGTCTATGACGAATATATTCAGGTTGACAAGAAAAAGAAAAATCTTTTAATTTATGGCGATGGCCCTACAAAAACCATTATCACTGGTAATAAAAATTTCGTAGATGGTTATAAGACTATGCGGTCGGCTACATTCTCTACCACTGCGGAAGATTTCATTGCAAAGGCAATGACATTCGAGAACACAGCAGGAGCAAGCAAACATCAAGCAGTAGCGCTTCGTGTGCAAGGCGACCGATCAGCTTTCTTTGACTGCGCCATACGAGGTTACCAAGACACATTATATGCACACGCCCACCGACAATTCTACAAAAACTGCGAAATTTCAGGCACAGTTGATTTCATTTTCGGCTATGCATCAACAGTAATACAAAGTTCGAAAATAATAATTCGAAAACCGGATGCAAATCAACAAAACATAATTGTAGCAGATGGAACACAGCAAAAGAACATGCCAACAGGAGTAGTACTTCAGAATTGTGAGATCATGCCAGAACCAGAATTACAAGCTGATAGATTAACAGTTAAATCATATTTAGCAAGACCATGGAAAGCATATTCAAGAGCAATATTCATGGAAAATACTATAGGTGATTTAATTCAACCAGATGGATATCTTCCATGGGCAGGGACTCAATTTCTTGATACATGTTTCTTTGCTGAGTATAATAATATTGGACCTGGTTCAGATGTTAAAGCAAGAGTTCAATGGGGAAAAGGTGTTCTTACAAAAGCTGATGCAATTAAATATACTGCTAGTGAATGGATTCAAGGTGGCATTTGGTTACCTGCTACTGGTATACCCTTTGAGCTTGGATTCACTAAAGCTTGA 1695 0.3976 MESKVLVSAVSLILVVGVALGVVALVRTSDKPGDNGPELNAHTKAVQAVCQGSDDKKFCVDTLNPVNTSDPNDYIKTVVKTSMEGVIKAFNMSDKLAVENHKDNSTIKMALDDCKDLLQSAIQELQASEVLMHDTNTQNVHDRTAELKNWLGAVIAYQQSCLDGFDTDGEKKVQSQLQTGSLDDVEKLTALALDVVSAVSKVLAAFDLDLDVKTSSRRLFEAGEEGYPEWMSAADRKLMADMSTGMGAATPNAVVAKDGSGQFNTVLDAINSYPKKHVGRFVIYVKAGVYDEYIQVDKKKKNLLIYGDGPTKTIITGNKNFVDGYKTMRSATFSTTAEDFIAKAMTFENTAGASKHQAVALRVQGDRSAFFDCAIRGYQDTLYAHAHRQFYKNCEISGTVDFIFGYASTVIQSSKIIIRKPDANQQNIIVADGTQQKNMPTGVVLQNCEIMPEPELQADRLTVKSYLARPWKAYSRAIFMENTIGDLIQPDGYLPWAGTQFLDTCFFAEYNNIGPGSDVKARVQWGKGVLTKADAIKYTASEWIQGGIWLPATGIPFELGFTKA 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04367 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 200 IPR035513 -
Trre1g04367 564 SMART PMEI_2 41 195 IPR006501 GO:0004857
Trre1g04367 564 PANTHER PECTINESTERASE 18 551 - -
Trre1g04367 564 SUPERFAMILY Pectin lyase-like 248 559 IPR011050 -
Trre1g04367 564 CDD PMEI-like_3 48 201 - -
Trre1g04367 564 FunFam Pectinesterase 246 561 - -
Trre1g04367 564 NCBIfam pectinesterase inhibitor domain 32 195 IPR006501 GO:0004857
Trre1g04367 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 198 IPR035513 -
Trre1g04367 564 FunFam Pectinesterase 42 200 - -
Trre1g04367 564 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Trre1g04367 564 Pfam Pectinesterase 252 546 IPR000070 GO:0030599|GO:0042545
Trre1g04367 564 Pfam Plant invertase/pectin methylesterase inhibitor 45 194 IPR006501 GO:0004857
Trre1g04367 564 Gene3D - 247 561 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04367 Trre-Chr1 49499318 49501128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04367 5 561 Carbohydrate Esterase AT3G05610 41.533 9.65e-144 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04367 K01051 - gmx:100820142 804.283