Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04364 ATGGGTGATGAAACTGAGAAGGATGTTGGTGTTGTTGAAGATAAAAGGAATAATCATGATGATGAAGCAACAACGTCAGAGAAAAAAGTTGCAGAAACAAGTACTACTACAAACGGTGAAAATGAAAAGGACAAAACAAAAGAGAAACAAGAGACAGTTCCATTTCACAAATTGTTCACTTTTGCAGATTCTACTGACATTTTATTAATGATTGTTGGAACAATCGGTGCTATTGGAAACGGTTTGGGTTTACCTCTTATGACATTGTTGTTCGGTGAAATGATTGATAGTTTTGGTAGTAATCAAAGTAACACCGATGATGTTGTTCAACAAGTATCCAAGGTGTCTCTGAAATTTGTATATTTGGCAGTAGGATGTGGGGTGGCAGCATTTCTCCAGGTGAGTTGTTGGATGGTTACAGGGGAAAGACAAGCTGCAAGAATAAGAGGATTGTATTTGAAAACAATATTAAGACAAGATGTCACTTTCTTTGATAAAGAAACAAACACTGGAGAAGTTGTTGGGAGAATGTCAGGTGACACTGTTCTAATTCAAGATGCCATGGGTGAGAAGGTTGGGAAATTTTTGCAGCTAATAGCAACATTCATTGGGGGTTTTGTGATAGCATTTACAAAAGGGTGGCTTCTTACTGTTGTAATGATGTCAACTCTTCCACTTCTTGTTGTGTCAGGTGCTGCCATGGCTGTTATCATAGGCAGAATGGCTTCTAAAGGTCAAACTGCTTATGCAAAAGCTGCACATGTTGTTGAACAGACAATTGGCTCAATAAGAACCGTTGCATCCTTTACTGGAGAAAAGCAAGCAGTGTCTAGTTATAGCAAATTTCTTGTAGATGCTTACAAAGCAGGAGTTTTTGAAGGTTCTATAGCTGGAGTAGGCCTAGGAACAGTCATGTTTGTTATTTTCTGTGGTTATGCTTTAGCTGTATGGTTTGGTGCAAAGATGATAATGGAAAAAGGATATAATGGCGGCACCGTCATTAATGTGATCATCGCCGTGTTAACTGCTTCCATGTCTCTTGGCCAGGCATCACCTAGTCTGAGTGCTTTTGCGGCGGGTCAGGCAGCAGCTTACAAAATGTTTGAGACGATTAATAGGAAGCCGGAGATAGATGCTTATGATCCAAATGGAAAAATATTAGAAGACATTCAAGGTGAAATAGAGTTGAAGGAAGTTTATTTCAGTTATCCTGCAAGACCCGAGGAGCTTATATTCAACGGATTCTCTCTTCATATACCGAGCGGAACAACTGCGGCATTAGTTGGACAAAGTGGAAGCGGAAAGTCCACAGTTATTAGTTTGGTAGAAAGATTCTATGATCCTCAAGCAGGTGAAGTTCTTATTGATGGCATTAACATGAAAGAATTTCAGCTCAGGTGGATTAGAGGGAAAATCGGTCTTGTTAGCCAGGAGCCAGTGTTGTTTGCATCAAGCATTAAGGATAACATCGCATATGGTAAAGATGGAGCAACAATCGAAGAGATAAGATCTGCGTCCGAACTTGCAAATGCTGCCAAATTCATTGATAAACTTCCACAGGGATTGGACACAATGGTTGGTGAGCATGGAACTCAGCTGTCTGGTGGACAGAAGCAGCGCATTGCCATCGCAAGAGCAATCCTTAAGAATCCAAGAATTTTACTTCTCGATGAAGCTACAAGTGCACTTGATGCAGAATCTGAAAGGGTGGTGCAAGAGGCTCTAGATAGGATCATGGTCAACCGAACCACGGTTGTTGTCGCACATCGCTTGAGCACAGTGAGGAATGCTGACATGATTGCTGTAATCCATAGAGGGAAAATGGTTGAGAAAGGAACACACTCAGAATTACTCAAGGATCCCGAAGGAGCTTATTCACAACTTATACGCTTACAAGAAGTAAACAAGGAATCAGAAGAAACTACTGACCTCAACAGTAAGAGAGAATTTTCGGCAGAATCCCTTAGACAATCAAGTCAAAGGAAGTCGCTTCAAAGATCTATTAGTAAAGGATCATCTATAGGGAATAGTAGCCGCCATTCGTTTTCGGTTTCGTTCGGTTTACCAACAGGAATTAACGTTGCTGATCCTGATGAACTTGAAAATTTACCAGCCAAAGAAAAAGGACCAGAAGTTCCATTAAGCCGCCTTGCTTCCCTCAACAAGCCAGAGATTCCAGTTCTGCTTTTGGGATGTTTAGCTGCCATAGGAAACGGTGTCATATTTCCAATATTCGGTGTTTTGATCTCCAGTGTCATCAAAACATTTTACGAACCGTTTGATGAGATGAAAAAGGACTCAAAGTTTTGGGCAATAATGTTTACGCTCCTTGGTGTTGCATCATTAGTGGTGATTCCAGCGCGATCTTATTTTTTCTCAGTGGCCGGATGTAAGTTAATCCAACGTATCAGGCTATTATGTTTTGAGAAAGTGGTGAGCATGGAGGTTAGTTGGTTTGATGAGCCTGAAAACTCAAGCGGCGCAATTGGTGCAAGGCTCTCAGCCGATGCTGCTTCTGTTCGCGCACTTGTTGGTGATGCACTTGGACTGGTGGTTCAGAATTTGGCAACTGCATTGGCTGGTTTGATTATTGCTTTCATTGCGAGCTGGCAGCTCGCGTTGATTATTCTTGTCTTGATTCCTCTCATTGGATTAAATGGATACGTTCAAATGAAATTTATGAAGGGATTCAGCGCAGATGCAAAGATGATGTACGAGGAAGCTAGCCAAGTTGCAAACGATGCTGTTGGAAGCATAAGAACTGTGGCATCTTTCTGTGCTGAAGATAAGGTTATGGAACTATATAGGAGGAAATGTGAAGGTCCCATGAAAACGGGAATAAGGCAAGGAATAATAAGTGGATCAGGATTCGGTGTTTCATTTTTCTTACTGTTTTGTGTCTATGCAACAAGTTTCTACGCTGGAGCTAGACTTGTGGAATCCGGCGATACAAAATTTTCAGAAGTTTTCCGGGTTTTCTTTGCGTTAACTATGGCGGCTATCGGTATTTCTCAGTCAAGTTCCTTTGCTCCTGACTCAAGTAAAGCAAAGTCAGCTGCCGGTTCCATATTTGGAATGCTTGATAAGAAATCAAAGATTGATCCAACTGACGAATCTGGTACCACTCTAGATAGCGTTAAAGGCGAAATTGAGCTTCGTCATGTTAGTTTCAAGTATCCATCTCGGCCTGATATTCAGATTTTCCGAGACCTCAACTTGAACATCCATTCTGGCAAGACAGTAGCACTCGTCGGTGAAAGTGGAAGCGGAAAATCAACTGTGATTGCTTTGTTGCAACGATTTTATGATCCTGATTCGGGTGAAATCACACTTGACGGAATCGAAATTCGTCAGTTAAATCTCAAGTGGTTAAGGCAACAAATGGGTCTTGTAAGCCAAGAACCAGTATTATTCAATGACACTATCCGTGCAAATATTGCTTATGGTAAAGATGGCAATGCAACTGAGGCTGAAATCATAGCTGCTTCTGAATTGGCCAATGCTCATAGGTTCATCAGTAGCTTACAACAGGGTTATGATACAATAGTGGGAGAGAGAGGAACTCAATTATCAGGTGGACAAAAACAAAGGGTAGCTATTGCACGTGCAATAATAAAAAGTCCAAAGATTTTGTTACTTGATGAAGCCACAAGTGCATTAGATGCTGAGTCAGAAAGAGTTGTTCAAGATGCATTAGACAAAGTTATGGTGAATAGAACCACTGTGGTTGTGGCACATCGTTTATCAACAATTAAAAATGCTGATGTTATTGCTGTTGTTAAAAATGGTGTTATAGTTGAAAAAGGAAGACATGAAACACTTATTAATGTTAAAGATGGATTTTATGCTTCCTTAGTTCAACTTCATACAAGTGCTAAAACAGTATGA 3888 0.4069 MGDETEKDVGVVEDKRNNHDDEATTSEKKVAETSTTTNGENEKDKTKEKQETVPFHKLFTFADSTDILLMIVGTIGAIGNGLGLPLMTLLFGEMIDSFGSNQSNTDDVVQQVSKVSLKFVYLAVGCGVAAFLQVSCWMVTGERQAARIRGLYLKTILRQDVTFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLIATFIGGFVIAFTKGWLLTVVMMSTLPLLVVSGAAMAVIIGRMASKGQTAYAKAAHVVEQTIGSIRTVASFTGEKQAVSSYSKFLVDAYKAGVFEGSIAGVGLGTVMFVIFCGYALAVWFGAKMIMEKGYNGGTVINVIIAVLTASMSLGQASPSLSAFAAGQAAAYKMFETINRKPEIDAYDPNGKILEDIQGEIELKEVYFSYPARPEELIFNGFSLHIPSGTTAALVGQSGSGKSTVISLVERFYDPQAGEVLIDGINMKEFQLRWIRGKIGLVSQEPVLFASSIKDNIAYGKDGATIEEIRSASELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHRGKMVEKGTHSELLKDPEGAYSQLIRLQEVNKESEETTDLNSKREFSAESLRQSSQRKSLQRSISKGSSIGNSSRHSFSVSFGLPTGINVADPDELENLPAKEKGPEVPLSRLASLNKPEIPVLLLGCLAAIGNGVIFPIFGVLISSVIKTFYEPFDEMKKDSKFWAIMFTLLGVASLVVIPARSYFFSVAGCKLIQRIRLLCFEKVVSMEVSWFDEPENSSGAIGARLSADAASVRALVGDALGLVVQNLATALAGLIIAFIASWQLALIILVLIPLIGLNGYVQMKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEDKVMELYRRKCEGPMKTGIRQGIISGSGFGVSFFLLFCVYATSFYAGARLVESGDTKFSEVFRVFFALTMAAIGISQSSSFAPDSSKAKSAAGSIFGMLDKKSKIDPTDESGTTLDSVKGEIELRHVSFKYPSRPDIQIFRDLNLNIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGIEIRQLNLKWLRQQMGLVSQEPVLFNDTIRANIAYGKDGNATEAEIIAASELANAHRFISSLQQGYDTIVGERGTQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLINVKDGFYASLVQLHTSAKTV 1295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04364 1295 ProSitePatterns ABC transporters family signature. 533 547 IPR017871 GO:0005524|GO:0016887
Trre1g04364 1295 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 394 630 IPR003439 GO:0005524
Trre1g04364 1295 MobiDBLite consensus disorder prediction 1 49 - -
Trre1g04364 1295 MobiDBLite consensus disorder prediction 651 679 - -
Trre1g04364 1295 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 71 359 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre1g04364 1295 Pfam ABC transporter transmembrane region 70 345 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre1g04364 1295 Pfam ABC transporter transmembrane region 728 1000 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre1g04364 1295 CDD ABC_MTABC3_MDL1_MDL2 1050 1288 - -
Trre1g04364 1295 Gene3D - 392 649 IPR027417 -
Trre1g04364 1295 FunFam ABC transporter B family member 1 1040 1290 - -
Trre1g04364 1295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 632 IPR027417 -
Trre1g04364 1295 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1050 1287 IPR003439 GO:0005524
Trre1g04364 1295 CDD ABC_6TM_Pgp_ABCB1_D2_like 718 1033 - -
Trre1g04364 1295 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 729 1015 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre1g04364 1295 MobiDBLite consensus disorder prediction 1 28 - -
Trre1g04364 1295 MobiDBLite consensus disorder prediction 636 679 - -
Trre1g04364 1295 Pfam ABC transporter 413 561 IPR003439 GO:0005524
Trre1g04364 1295 SUPERFAMILY ABC transporter transmembrane region 51 378 IPR036640 GO:0005524|GO:0016020
Trre1g04364 1295 SUPERFAMILY ABC transporter transmembrane region 716 1034 IPR036640 GO:0005524|GO:0016020
Trre1g04364 1295 Gene3D - 1040 1294 IPR027417 -
Trre1g04364 1295 MobiDBLite consensus disorder prediction 636 650 - -
Trre1g04364 1295 Gene3D ABC transporter type 1, transmembrane domain 117 1024 IPR036640 GO:0005524|GO:0016020
Trre1g04364 1295 FunFam ABC transporter B family member 1 384 633 - -
Trre1g04364 1295 CDD ABC_MTABC3_MDL1_MDL2 394 632 - -
Trre1g04364 1295 FunFam ABC transporter B family member 1 708 1016 - -
Trre1g04364 1295 Pfam ABC transporter 1069 1218 IPR003439 GO:0005524
Trre1g04364 1295 FunFam ABC transporter B family member 9 57 390 - -
Trre1g04364 1295 SMART AAA_5 421 607 IPR003593 GO:0016887
Trre1g04364 1295 SMART AAA_5 1077 1270 IPR003593 GO:0016887
Trre1g04364 1295 ProSitePatterns ABC transporters family signature. 1190 1204 IPR017871 GO:0005524|GO:0016887
Trre1g04364 1295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1040 1288 IPR027417 -
Trre1g04364 1295 CDD ABC_6TM_Pgp_ABCB1_D1_like 70 355 - -
Trre1g04364 1295 PANTHER ABC TRANSPORTER B FAMILY 29 634 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04364 Trre-Chr1 49451743 49457854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04364 43 1294 Calmodulin-binding Proteins AT2G36910 45.721 0.0 1095
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04364 K05658 - gmx:100777909 2165.19