Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04355 ATGGGAAAAGGTTCTGCTTCTTCTTCCTCCTCTTCCAACGGTAGAAGAAGGAAACATAATTCCTCTAATGTTTCATCATCCATCACACATCAAAATTCTGAAGAACATCTTTGTCCTGATCTTAACCTCGGATTGAGCATTTCCGCAACACATCAATATGTTCATTCTTCCAATTCAAGGGGACATTGGCAACCAATGCAACAACAACAAGCTTTTGAAGTGAATGATTGCAACGATTACAACAGTTTTTTTGTGAAGGTTTACATGGAAGGCATTCCAATTGGGAGAAAACTTAATTTATTAGCTCATGGTTGTTATGAAGAGCTAGTAAATACTCTTGAACAAATGTTTGACACTACCATTCTATGGGGGACTGAGATGGATGGAGTGCAATCAGAGAGATGTCATGTGTTAACTTATGAAGATGGAGAAGGAGATTTGATTATGGTTGGAGATGTCCCTTGGGAGATGTTCTTATCATCTGTGAAGAGGTTGAAGATCACAAGAGTCGATGCCTTCGGATTTTGA 528 0.3883 MGKGSASSSSSSNGRRRKHNSSNVSSSITHQNSEEHLCPDLNLGLSISATHQYVHSSNSRGHWQPMQQQQAFEVNDCNDYNSFFVKVYMEGIPIGRKLNLLAHGCYEELVNTLEQMFDTTILWGTEMDGVQSERCHVLTYEDGEGDLIMVGDVPWEMFLSSVKRLKITRVDAFGF 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04355 175 SUPERFAMILY CAD & PB1 domains 79 167 - -
Trre1g04355 175 Pfam AUX/IAA family 69 169 IPR033389 -
Trre1g04355 175 ProSiteProfiles PB1 domain profile. 82 172 IPR000270 GO:0005515
Trre1g04355 175 MobiDBLite consensus disorder prediction 1 33 - -
Trre1g04355 175 Gene3D - 76 174 - -
Trre1g04355 175 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 58 169 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04355 Trre-Chr1 49343587 49344614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04355 67 167 B3 DNA Binding Superfamily AT1G59750 32.673 1.16e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Trre1g04355 AUX_IAA 5.3e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04355 K14484 - gmx:100781660 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04355 1 49343587 49344614 Trre1g04355 1 49343587 49344614 ECH
Trre13g04899 13 55359270 55359927 Trre1g04355 1 49343587 49344614 PCT