Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04348 ATGGGGTATCTGATTATTGCTATTGCCATGGTGACTTTCACTATTATGATGTCAAAGATTTGGACAATATGTTTAATTGTCTTTTGGAGGCCATATGCACTGACTAGGCATTTTAGAAAGCAAGGAGTCATGGGGCCACTTTACTCACTTCTTTCTGGTTCTCTTCATGATATCAAAACAATGATGATTGATGCAAGGAAAAGTGTCATGGATAAACACTCACACGATATTACTCAAAGGGTTCTTCCTCACTACCAATTATGGTCCTCCTTATATGGGGAGAGATTTCTATATTGGTACGGTACAGATGCAATGATTTGCATCTCTGATGTAGAACTGGTGAAGGAGATTTTATCAAATAAATTTGGTTTCTATCCAAAACGCAAAGTAAGGCGTCCTTCCGTAGTAACACTAGTAGGAGAAGGATTAGCTCTTATGGAAGGAGAAGAATGGGTTAGGCGCAGAAAGATACTCAATCCTGCTTTTTCCATGGATAAACTCAAGGTTATGATAAGTAGAATGGCAGCATGTACCATTTCCATGGTAGATGAGTGGAAAAGGAAAGCCATTGAAGCAAAGGATAAATCAATGACAATAGAGATGAGTGAAGAATTTCAAGAGCTAACAGCAAATATAATCGCTCACACTGCCTTTGGTACCAGCTTTGCTCATGGTAGAGATGCCTTTAAAGCACAAACAGAGCTTCAATTGCATTGTGCAGCTTCAAGTTCTGATGTTTTCATTCCTGGCACACAATATTTACCTACTAAGTCAAACATTAAGATATGGAAGCTTGATAGGAAAATGAAGAAATCACTAAAAAGCATTATTGAGAGTAGGTTGAAGTCTCAATCAGATAATTGCTCTTATGGAGATGATTTACTAGGAGTCATAATGGATACAAAGAATGATGGTCCTAATAAGTTGAAGATGAATGAAATTATTGAAGAATGCAAAACCTTTTTCTTTGCTGGTCATGAAACCACTTCAAACTGGCTTGTTTGGACTGTCTTTTTGTTGAGTATGCATAAGGAATGGCAAGAAAAACTTAGACAAGAGATCTTGGAGATTTGTGGCATGGAAATTCCTGATGCAGATATGCTATCAAAGTTAAAAATGGTGAACATGGTGTTGCTGGAATCATTAAGGTTGTACAGTCCTGCAATAGAACTAGAAAGAATGGCTTCAAAAGACATGAAATTAGGAAATTTGATGATACCAAAAGGAACATGTCTCAAACTCCCAATTGCAATGATTCACAGAAGTACAAAATACTGGGGTGAAGATGCAAATGAGTTCAATCCAATGAGATTCGTAAATGGTGTATCTAAGGCTGCAAATCACCCAAATGCTCTACTTGCATTTTCTGTAGGTCCAAGAAATTGCATTGGTCAGAACTTTGCTATGTTGGAAGCTAAAACAGTGATGACTTTAATTTTTCAAAGGTTTTCTTGGTCTCTTTCACCTGACTATCAACATGCACCTGTTAACAACCTCACTTTGCAACCACAACATGGTCTTCCCATCATTATAAAACCATTGCAGTTCTAA 1551 0.3727 MGYLIIAIAMVTFTIMMSKIWTICLIVFWRPYALTRHFRKQGVMGPLYSLLSGSLHDIKTMMIDARKSVMDKHSHDITQRVLPHYQLWSSLYGERFLYWYGTDAMICISDVELVKEILSNKFGFYPKRKVRRPSVVTLVGEGLALMEGEEWVRRRKILNPAFSMDKLKVMISRMAACTISMVDEWKRKAIEAKDKSMTIEMSEEFQELTANIIAHTAFGTSFAHGRDAFKAQTELQLHCAASSSDVFIPGTQYLPTKSNIKIWKLDRKMKKSLKSIIESRLKSQSDNCSYGDDLLGVIMDTKNDGPNKLKMNEIIEECKTFFFAGHETTSNWLVWTVFLLSMHKEWQEKLRQEILEICGMEIPDADMLSKLKMVNMVLLESLRLYSPAIELERMASKDMKLGNLMIPKGTCLKLPIAMIHRSTKYWGEDANEFNPMRFVNGVSKAANHPNALLAFSVGPRNCIGQNFAMLEAKTVMTLIFQRFSWSLSPDYQHAPVNNLTLQPQHGLPIIIKPLQF 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04348 516 Pfam Cytochrome P450 89 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04348 516 Gene3D Cytochrome P450 28 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04348 516 SUPERFAMILY Cytochrome P450 77 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04348 516 FunFam Cytochrome P450 734A1 28 515 - -
Trre1g04348 516 PRINTS P450 superfamily signature 453 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04348 516 PRINTS P450 superfamily signature 462 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04348 516 PRINTS P450 superfamily signature 376 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04348 516 PRINTS P450 superfamily signature 324 341 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04348 516 PANTHER CYTOCHROME P450 FAMILY MEMBER 25 506 - -
Trre1g04348 516 PRINTS E-class P450 group I signature 89 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04348 516 PRINTS E-class P450 group I signature 208 226 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04348 516 PRINTS E-class P450 group I signature 452 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04348 516 PRINTS E-class P450 group I signature 462 485 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g04348 516 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 455 464 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04348 Trre-Chr1 49258084 49262972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04348 25 515 Cytochrome P450 AT2G46960 55.221 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04348 K20660 - aprc:113872106 778.089