Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04339 ATGGCATCTTCCTTCTCAACACAGTTGGTTCAGAGTCAGAACATACTTCCTCGTTTTCATGCTGTACAGGGGAAGCCACATGTAGTGTGTAGCAGTGTCAAATCACAGGTTGGATGCAGTAAATTGTCATCAAGCTATCATTACGCAGCGAGGCTTTCTGTGTCACAACAATCTAAAGCAAAATCAATCACTTCTCGGAGAATAACATGTACTAGTAGTGCTGCAGAAAGTGTTGAAGAGCTGCAAGCCAAAGTAACACACAAGGTTTTCTTTGATATAGAAATTGGGAAACAACCTGCTGGAAGAATCGTTATTGGCTTATTTGGAGATGTTGTTCCCAAAACAGCTGAAAATTTCCGAGCTTTGTCCACTGGAGAGAAAGGATATGGCTACAAAGGATCCTTCTTCCATCGTATAATCCCAAAATTCATGATTCAGGGAGGCGACTTCACTGAAGGAAATGGAACCGGTGGAGTCAGTATCTATGGTGGTAAATTTGAAGATGAGAGTTTTGACTTGAAGCATGTTGGTCCCGGAGTTTTGAGTATGGCGAATGCTGGTGCTAATTCCAATGGCAGTCAATTTTTTATTTGCACTGTACCGACTCCATGGTTAGACAATAAACATGTTGTGTTTGGACATGTTCTTGAAGGACTGGATGTTGTAAAGAAGCTTGAATCACAGGAGGTAAGCAGCTACAACAATTATCCCGAGAAACCATGCAAAATCGCTGATTCTGGAGAACTGCCTATAGATGGTTGA 762 0.4173 MASSFSTQLVQSQNILPRFHAVQGKPHVVCSSVKSQVGCSKLSSSYHYAARLSVSQQSKAKSITSRRITCTSSAAESVEELQAKVTHKVFFDIEIGKQPAGRIVIGLFGDVVPKTAENFRALSTGEKGYGYKGSFFHRIIPKFMIQGGDFTEGNGTGGVSIYGGKFEDESFDLKHVGPGVLSMANAGANSNGSQFFICTVPTPWLDNKHVVFGHVLEGLDVVKKLESQEVSSYNNYPEKPCKIADSGELPIDG 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04339 253 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 90 248 IPR002130 GO:0000413|GO:0003755
Trre1g04339 253 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 91 246 IPR002130 GO:0000413|GO:0003755
Trre1g04339 253 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 131 148 IPR020892 GO:0003755|GO:0006457
Trre1g04339 253 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 88 249 - -
Trre1g04339 253 CDD cyclophilin_ABH_like 87 247 - -
Trre1g04339 253 Gene3D - 76 252 IPR029000 -
Trre1g04339 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Trre1g04339 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 136 148 IPR002130 GO:0000413|GO:0003755
Trre1g04339 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 179 194 IPR002130 GO:0000413|GO:0003755
Trre1g04339 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 194 206 IPR002130 GO:0000413|GO:0003755
Trre1g04339 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 207 222 IPR002130 GO:0000413|GO:0003755
Trre1g04339 253 SUPERFAMILY Cyclophilin-like 81 249 IPR029000 -
Trre1g04339 253 FunFam Peptidyl-prolyl cis-trans isomerase 75 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04339 Trre-Chr1 49093943 49096283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04339 39 246 U-box Gene Family AT5G67530 35.714 4.96e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04339 K03768 - gmx:100526955 358.992