Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04337 ATGGGTAACGGCAGTTCTCGTGTTGTTGGGTGTTTAGTGCCATTCAATGGCAAAAATGGTGTTGATTTGGAGTTTTTAGAGCCATTAGATGAAGGTTTAGGCCATTCTTTTTGTTATGTGAGACCAACTATGTTTGAATCTCCTGCTATTAGCCCGTCGAATTCTGAGAGGTTTACGGTTGATTCAAGTACTCTTGATTCTGAAACTTTGAGTGGTTCCTTTAGGCATGATAGCATGGAGCATTCTAATTCTTCTGGTTTGCATAAGCAGAGTAAGAATTTCCCTGAAACTACTTTCAAAACGATTTCGGGGGCTTCTGTTAGTGCTAATGTTTCCACAGCAAGGACTGGTGGTAACCAGAGTGCATTGTTTGCTGGTGATTTCTTGGAACCTGCTGCATCGTTTGAGGGAACTGCTTCATTTGCTGCGATTCCTTTGCAGCCGGTTCCTCGTGGTTCTGGACCTTTAAATGGTTTTATGTCTGGACCTTTGGAGAGAGGTTTTGCCTCGGGTCCATTGGATAGAAGTGGTGGTTTCATGTCTGGGCCAATAGAGAAAGGAGTTATGTCAGGTCCTCTTGATGATACTGATAAATCGAACTTTTCAGCTCCGCTTGCGCGTGGTCGCCGGAGACCACGTTTACAAAATCTCATGAGAAGTGTTAGTGGACCGATGAAGAACACTTTTTCTCGAACGTTCTCTAAGCATTCCATGGGTGGGAGTTGGATGCAGAGGTTGTTCATTCAACCGGTTACTCAATTGGCATGGCATTCCAAAGACGCAAAGTGTAGACCGGAAGTCTCTAGGAACTGTGGCATTGATGTTGGACCATACGAAACTGAGTATAAACACACACATAATTTGCAGTGGGCTCAGGGAAAGGCTGGTGAGGATAGGGTTCATGTAGTGCTTTCTGAAGAACAAGGGTGGTTGTTTATTGGGATATATGATGGTTTTAGTGGGCCAGATGCACCTGATTTTTTGATGAGCCATCTTTATAGATTTCTAGACAAAGAATTGGAAGGTTTACTTTGGGATTATGAAGATAATCCTGTAGATCCACTTAAACCTGAAATCCCTGAAACTGTAAAAGCCACCGCTGCTCCAGAATGCAGCGCGCAAGAAATATCTGATACTTGTACTAATTCTAATCAAGAATGTTTTGAAGCTTCTTCTGGTCCTGAGTTAATCAAGGATCAATCATATAACAGTGAGATAGTTGAGATGAATGCTGAAGTTAATGTAAATGTTGAACACCAGTTATCTAATTGCGTAAGTAACTCGTCAACTGTTTCCAATTCGGTTCAACAAGGACAGTTGACCGGAAAAGGTAGAAAAAGTTTGAGGCTTTATGAGTTACTTCAGATGGAATCATGGGATGAACAAGGTTTTTTGTCAGACTCTGCTCAATGTAAAGATTCTTCAGTTCCGAAGGAGTCGAAACTAGATGGGCATACAAGACCTTTGTCGTTTAGTTTAAGAGAAGATGGTTCTAGACATCTGGATGAAGTCCCGTCTACATCAGGTGAAAATGGAGGCACTAGGTTTGATTCAACCAACCAGGAGCATGAGGCTGTTTTTTCTGTTTCTGAATCAAGGCAGAATTCAAAGAAGTCGTTTATCAGTGCAAAAATTAAAAAAATGTACAGGAAGCCAAAATCCTTGTGTAAGAAACTCTTTCCTTGGAGTTATGATTGGCATAGGGAGGAAAGTAGTGTTGACGAGAAAATAATAGAAGCATCGGGACCTATTAGAAAATGCAGGTCTGGAGTAGATCATAACGCAGTTTTAACAGCAATGGCTCGGGCTCTTGAAAGAACAGAAGAGGCATACATGGAAATGGCAGAGCATAATCTGGTAAAAAATCCAGAACAAGCTATTATGGGATCATGTGTTCTAGTGATGTTGATGAAGGATCAAGATGTTTATGTCATGAATCTGGGAGATAGTCGTGTGATTTTGGCTCAAGAAAGATCAAACGATCGTCATCCTAATTCAAGTTCTGTCAAGGATGACATGAGGCATAGAAATAGATCTAGAGAGTCATTAGTGCGCATGGAGCTCGATAGGATTTCAGAGGAGTCCCCAATTCACAACCATAACAATCATGTTATCAAGATGAACAAAAACCGCGAGATATCCTTTTGCAAATTAAAAATGAGGGCTCTGCAGCTTTCTACAGATCACAGCACCAGTATTGAAGAGGAAGTTTTCAGAATAAGAGCAGAACACCCCGATGATAGTCAAGCCATATTAAATGATCGAGTGAAAGGACATTTAAAAGTTACCAGAGCATTTGGTGCTGGGTTCTTGAAAAGGCCGTCTTTTAATGACGCTCTACTCGAGGTGTTCCAAATTAATTATGTTGGCTCTGCTCCCTACCTAAGTTGCACTCCTTCTGTCCTTCACCACCGACTTTCCTCGAGTGATCGATTCTTGGTACTCTCGTCAGATGGGCTTTACCAGTATTTTAGCAATGAAGAGGTAGTTGCTCATGTCACATGGTTCATGGAAAATGTCCCAGAAGGTGATCCCGCACAGTACCTTATTGCAGAGCTTCTCTTCTGTGCTGCTAAAAAGAATGGAATGGATTTCCATGAATTGCTTGATATTCCTCATGGAGATCGACGGAAATATCATGATGATGTATATGTCATGGTTGTTTCTTTGGAGGGAAAGTTTTGGAGATCATCAAGTGATAAATCCTATTTTTTCCCTTCCTTTTAA 2727 0.4133 MGNGSSRVVGCLVPFNGKNGVDLEFLEPLDEGLGHSFCYVRPTMFESPAISPSNSERFTVDSSTLDSETLSGSFRHDSMEHSNSSGLHKQSKNFPETTFKTISGASVSANVSTARTGGNQSALFAGDFLEPAASFEGTASFAAIPLQPVPRGSGPLNGFMSGPLERGFASGPLDRSGGFMSGPIEKGVMSGPLDDTDKSNFSAPLARGRRRPRLQNLMRSVSGPMKNTFSRTFSKHSMGGSWMQRLFIQPVTQLAWHSKDAKCRPEVSRNCGIDVGPYETEYKHTHNLQWAQGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRFLDKELEGLLWDYEDNPVDPLKPEIPETVKATAAPECSAQEISDTCTNSNQECFEASSGPELIKDQSYNSEIVEMNAEVNVNVEHQLSNCVSNSSTVSNSVQQGQLTGKGRKSLRLYELLQMESWDEQGFLSDSAQCKDSSVPKESKLDGHTRPLSFSLREDGSRHLDEVPSTSGENGGTRFDSTNQEHEAVFSVSESRQNSKKSFISAKIKKMYRKPKSLCKKLFPWSYDWHREESSVDEKIIEASGPIRKCRSGVDHNAVLTAMARALERTEEAYMEMAEHNLVKNPEQAIMGSCVLVMLMKDQDVYVMNLGDSRVILAQERSNDRHPNSSSVKDDMRHRNRSRESLVRMELDRISEESPIHNHNNHVIKMNKNREISFCKLKMRALQLSTDHSTSIEEEVFRIRAEHPDDSQAILNDRVKGHLKVTRAFGAGFLKRPSFNDALLEVFQINYVGSAPYLSCTPSVLHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFCAAKKNGMDFHELLDIPHGDRRKYHDDVYVMVVSLEGKFWRSSSDKSYFFPSF 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04337 908 CDD PP2Cc 596 890 IPR001932 -
Trre1g04337 908 Gene3D - 506 901 IPR036457 -
Trre1g04337 908 MobiDBLite consensus disorder prediction 504 520 - -
Trre1g04337 908 MobiDBLite consensus disorder prediction 656 678 - -
Trre1g04337 908 MobiDBLite consensus disorder prediction 474 503 - -
Trre1g04337 908 FunFam Protein phosphatase 2C 32 257 424 - -
Trre1g04337 908 ProSiteProfiles PPM-type phosphatase domain profile. 281 890 IPR001932 -
Trre1g04337 908 PANTHER PROTEIN PHOSPHATASE 2C 285 888 IPR015655 GO:0004722|GO:0006470
Trre1g04337 908 MobiDBLite consensus disorder prediction 73 93 - -
Trre1g04337 908 Gene3D - 266 439 IPR036457 -
Trre1g04337 908 SUPERFAMILY PP2C-like 293 891 IPR036457 -
Trre1g04337 908 MobiDBLite consensus disorder prediction 469 520 - -
Trre1g04337 908 SMART PP2C_4 281 888 IPR001932 -
Trre1g04337 908 Pfam Protein phosphatase 2C 608 660 IPR001932 -
Trre1g04337 908 Pfam Protein phosphatase 2C 722 838 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04337 Trre-Chr1 49019828 49025230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04337 1 898 PP2C-type Phosphatase Gene Family AT2G46920 61.936 0.0 1066
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04337 - - pcin:129315875 1387.86