Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04326 ATGACTAGGAAGAAGGTGAAACTTGCCTTTATCGTTGATGATTCAGCAAGGAAGGCAACCTATAAGAAAAGAAAGAATGGCATCATCAAGAAGGTGAGTGAACTAACCATTCTTTGTGGTATTCCAGCATGTGCTATAATTTCAAATCCTTTTGATTCTAAAGCAGAGGTGTGGCCAAATCTAGCAGAAGCCAAGCAGGTTATTGAGAGATATCAGAATTCATCTGTCATAGATGGGGCAAAAAATGTGAACCAAGAGAGCTTCCTCTTGCAGAGGATCACTAAAGCCAGAGAGCAACTTAAAAAGCAAAAGCACGACAATCGTGAAAAGGAGCTGACCATTCGTATGATTGGGTACATGAAAAACAAACAGATGCCTGATGATCTATCTGTTTCAGATTTGAAAGAATTTAATAAGCTAATTGAGAAAAATCTGAAAGAGATTGATAATAAGATTGTTGAGCTCAATTGA 471 0.3758 MTRKKVKLAFIVDDSARKATYKKRKNGIIKKVSELTILCGIPACAIISNPFDSKAEVWPNLAEAKQVIERYQNSSVIDGAKNVNQESFLLQRITKAREQLKKQKHDNREKELTIRMIGYMKNKQMPDDLSVSDLKEFNKLIEKNLKEIDNKIVELN 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04326 156 Coils Coil 90 113 - -
Trre1g04326 156 Coils Coil 138 156 - -
Trre1g04326 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre1g04326 156 CDD MADS_SRF_like 2 59 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre1g04326 156 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Trre1g04326 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Trre1g04326 156 Gene3D - 13 117 IPR036879 GO:0003677|GO:0046983
Trre1g04326 156 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Trre1g04326 156 PANTHER MADS BOX PROTEIN 3 152 - -
Trre1g04326 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre1g04326 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04326 Trre-Chr1 48927325 48927795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04326 1 152 Type I MADS-box Gene Family AT5G48670 46.405 3.55e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre1g04326 SRF-TF 3.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04326 - - gmx:100792290 209.92