Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04292 ATGGCGGCGTCCGTTGGCGTGGCACCAACTTCAGGTTTTAGAGAAGCCAGTGGTCATGGTGAAATTGGTGTTGATGATATATTGCCAGAGGAAATGAATGATATGAAGATTAGGGATGATAGAGAAATGGAAGCCACCGTTGTTGACAGCGGCAATGGAACCGAGACCGGACATATCATTGTGACTACTATTGGTGGTAGAAATGGTCAGCCAAAGCAGACTATAAGCTATATGGCAGAGCGTGTTGTAGGACATGGATCATTTGGAGTTGTCTTTCAGGCTAAGTGCTTGGAAACCGGTGAAACTGTGGCTATCAAGAAGGTTCTTCAAGACAAGAGGTATAAGAACCGGGAGTTGCAAACAATGCGCCTTCTTGATCATCCAAATGTCGTCTCTTTAAAGCATTGTTTCTTTTCAACCACCGAAAAGGATGAACTATACCTTAATTTGGTACTTGAGTATGTTCCTGAAACCGTTCATCGTGTGATTAAGCATTACAACAAGTTGAACCAAAGGATGCCAATGATTTATGTGAAGCTCTATACGTACCAGATCTTTAGGGCATTATCTTATATTCATCGTTGTATTGGTGTCTGCCATCGAGATATCAAACCTCAAAATCTATTGGTCAATCCACACACCCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAAGTTTTGGTTAAAGGCGAACCAAATATATCGTACATATGTTCTAGATATTATAGAGCACCTGAGCTTATTTTTGGAGCAACTGAATATACTACAGCTATTGATGTCTGGTCTGTTGGTTGTGTTTTGGCTGAGCTGCTTCTTGGACAGCCGTTGTTCCCTGGCGAGAGTGGAGTTGATCAGCTTGTTGAGATCATCAAGGTTCTTGGAACTCCAACAAGAGAAGAGATTAAATGCATGAATCCTAATTATACAGAATTTAAATTCCCTCAAATCAAAGCACATCCATGGCACAAGATCTTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTATCAAGATTACTACAATACTCTCCAAACCTGCGGTGCCAAGCTTTAGATGCCTTGACTCATCCTTTCTTTGATGAGCTTCGTGACCCGAATGCCCGCTTGCCGACTGGTCGTTTCCTTCCACCACTATTTAACTTCAAACCTCACGAACTAAAAGGAATCCCAGTCGAGACCTTGGTGAAATTGGTTCCAGAGCATGCGAGGAAGCAATGCCCGTTTCTTGGCTTGTAA 1242 0.4243 MAASVGVAPTSGFREASGHGEIGVDDILPEEMNDMKIRDDREMEATVVDSGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIKHYNKLNQRMPMIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCQALDALTHPFFDELRDPNARLPTGRFLPPLFNFKPHELKGIPVETLVKLVPEHARKQCPFLGL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04292 413 SMART serkin_6 77 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04292 413 ProSitePatterns Protein kinases ATP-binding region signature. 83 107 IPR017441 GO:0005524
Trre1g04292 413 Gene3D Transferase(Phosphotransferase) domain 1 157 405 - -
Trre1g04292 413 Pfam Protein kinase domain 77 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04292 413 Gene3D Phosphorylase Kinase; domain 1 61 156 - -
Trre1g04292 413 FunFam Glycogen synthase kinase-3 beta 61 156 - -
Trre1g04292 413 CDD STKc_GSK3 72 364 IPR039192 -
Trre1g04292 413 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 40 407 - -
Trre1g04292 413 SUPERFAMILY Protein kinase-like (PK-like) 76 387 IPR011009 -
Trre1g04292 413 ProSiteProfiles Protein kinase domain profile. 77 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04292 413 MobiDBLite consensus disorder prediction 1 22 - -
Trre1g04292 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Trre1g04292 413 FunFam Shaggy-related protein kinase kappa 157 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04292 Trre-Chr1 48562704 48565658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04292 83 397 MAP Kinase Gene Family AT2G43790 34.557 2.11e-55 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Trre1g04292 Pkinase 1.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04292 K00924 - gmx:100780226 805.823