Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04291 ATGCCAATAAGAAAGTATTACTGCGAGTATTGCGAAAAGCAATTTCAAGACACTCCATCAGATCGGAAACGACACAATGCTGGCATTCAACATCAGCAAGCCAAAGCGCGTTGGTACGATTCCTTCAAACCCCAACAACAACGCAACAACCCTATTCCACCACCAAATCAACCCTTCTGCCTCCACTTCGTCAACACGGGATTTTGTCGTTACGCCGATTCTTGCAAATATTTTCATCCCAACAATATACAGCAGCAGCCGCAGCCGCCACAACCAATAATAACCACGGCAGGGGATGTAGTCGGAGAAAGTATGGGAGTATCGTTGGGAAATTTACCTCCCTCGCTGCAGCCTCCCCCTGAGGGTGGATACCCACACTTTCCCTTTGTCGATTGGGGATAG 402 0.4826 MPIRKYYCEYCEKQFQDTPSDRKRHNAGIQHQQAKARWYDSFKPQQQRNNPIPPPNQPFCLHFVNTGFCRYADSCKYFHPNNIQQQPQPPQPIITTAGDVVGESMGVSLGNLPPSLQPPPEGGYPHFPFVDWG 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04291 133 PANTHER NUCLEASE-RELATED 1 133 - -
Trre1g04291 133 Gene3D Classic Zinc Finger 3 46 - -
Trre1g04291 133 ProSiteProfiles Zinc finger C3H1-type profile. 54 82 IPR000571 GO:0046872
Trre1g04291 133 Pfam U1 zinc finger 4 39 IPR013085 GO:0008270
Trre1g04291 133 Gene3D - 47 98 - -
Trre1g04291 133 SUPERFAMILY CCCH zinc finger 57 82 IPR036855 GO:0046872
Trre1g04291 133 SUPERFAMILY beta-beta-alpha zinc fingers 4 48 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04291 Trre-Chr1 48554688 48555183 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre1g04291 zf-U1 2.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04291 K13152 - gmx:100527203 188.348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04291 1 48554688 48555183 Trre1g04291 1 48554688 48555183 ECH