Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04287 ATGAGTGTTAATGAGAATTCAGTTTCGAAGCCATTAACAGTTGAGATCAAAGAGCTGAAATTCACTTATCCTGGAATCGACGGTCATCCTCCGCCGGGTTCTAAACCTCTCATTGAACACTTCTCTCTCAATCTCTTTTCCGGTGATCGTTGTCTTCTCGTCGGATCCAATGGCGCAGGAAAAACTACAATTCTGAAGATATTAGGAGGGAAACATATGGTGGAACCTGAAATGGTTCGTGTTCTTGGTAGATCAGCTTTTCATGATACTGGTTTAACATCTTCTGGTGATTTATGTTATCTTGGTGGTGAGTGGAGGAGAGATGTTGCTTTTGCTGGTTTTGAAGTTCCAATACAGATGGACATTTCTGCTGAGAAAATGATATTTGGTGTGGCTGGGATTGATCCTGAAAGAAGAGCAGAGCTTATTAAGGTATTAGATATCAATCTTTCATGGAGATTGCATAAAGTATCTGATGGTCAAAGAAGAAGAGTGCAAATTTGTATGGGTCTCCTCAAACCTTTCAAGGTCCTTCTGCTGGATGAGATAACAGTTGACCTTGATGTTCTAGCAAGAGCTGACCTTCTGAAGTTTTTAAAAAAGGAATGTGATGAGAGGGGTGCCACTATTATATATGCAACACATATATTTGACGGTCTTGAGGATTGGCCAACAAATATTGTTTATGTTGCTCATGGAAGACTGCAACTAGCATTGCCCATGGAGAAAGTCAGAGAAATTAGCAAACTGTCACTAATGAGAACAGTAGAAGCTTGGCTACGGAAGGAACGAGATGAAGATAGAAGAAAAAGGAAAGAAAAGAAGGCTGCTGGCCTTCCTGAATTCGAAAAGCAAGTTGAGGGAAGTCGTGTAGTTGGGGGGGATCCTGCACGAGCTTCGGTTCGAGTTACTAATAATGGCTGGGCTGCAGGCAGGTTACATTCCACCATTGCTGGCGAAGAAAATTTCCTCCTAAGCTCAAACCGAGTATTGAGGGGGTAA 1002 0.4202 MSVNENSVSKPLTVEIKELKFTYPGIDGHPPPGSKPLIEHFSLNLFSGDRCLLVGSNGAGKTTILKILGGKHMVEPEMVRVLGRSAFHDTGLTSSGDLCYLGGEWRRDVAFAGFEVPIQMDISAEKMIFGVAGIDPERRAELIKVLDINLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLKFLKKECDERGATIIYATHIFDGLEDWPTNIVYVAHGRLQLALPMEKVREISKLSLMRTVEAWLRKERDEDRRKRKEKKAAGLPEFEKQVEGSRVVGGDPARASVRVTNNGWAAGRLHSTIAGEENFLLSSNRVLRG 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04287 333 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 14 257 IPR003439 GO:0005524
Trre1g04287 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 248 IPR027417 -
Trre1g04287 333 Gene3D - 8 290 IPR027417 -
Trre1g04287 333 PANTHER SKFA PEPTIDE EXPORT ATP-BINDING PROTEIN SKFE 13 260 - -
Trre1g04287 333 SMART AAA_5 47 234 IPR003593 GO:0016887
Trre1g04287 333 Pfam ABC transporter 40 184 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04287 Trre-Chr1 48499789 48502664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04287 14 211 Calmodulin-binding Proteins AT2G36910 24.186 8.09e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04287 K12608 - vvi:100259555 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04287 1 48499789 48502664 Trre1g04287 1 48499789 48502664 ECH