Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04284 ATGATTTATGGTAGGTGTGCAGCTTGTAAGAATCAAAGAAGAAGGTGTCCTTCTGATTGCATTTTCTCTCCTTATTTCCCGGCCAATGATCCTCAAAGATTTGCTTATGTTCACAAAATCTATGGTGGTAGCAATGTTGGAAAAATGCTTAAGCAATTGCCCGAGTATGTACGAGAACAAGCTGTAAATACTTTGTATTTAGAAGCACGATGTAGGATTCAAGATCCTGTTTATGGATGTGTTGGGATTGTCTCTAAATTGTATCAACAAATCCATGATGCAGAAGTTGAGCTGGCCAAAATCCAAACTCAAATTGCTTATCATAAGTTCCAAAATCAACAATTTGAAGTTGAATCAAATTTCAATGTCTTGTCTACAGTTGATGATGAATCAAATTTGAACTTTTTGCCACCACAAAGTAATAGCATGGAGCAGTTTCAGTGGCCCGATCATGTTCCTAATTTGTTCACTTAA 474 0.365 MIYGRCAACKNQRRRCPSDCIFSPYFPANDPQRFAYVHKIYGGSNVGKMLKQLPEYVREQAVNTLYLEARCRIQDPVYGCVGIVSKLYQQIHDAEVELAKIQTQIAYHKFQNQQFEVESNFNVLSTVDDESNLNFLPPQSNSMEQFQWPDHVPNLFT 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04284 157 Coils Coil 84 104 - -
Trre1g04284 157 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Trre1g04284 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 119 - -
Trre1g04284 157 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04284 Trre-Chr1 48490346 48491232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04284 5 106 AS2 family AT3G26660 63.725 3.85e-46 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre1g04284 LOB 1.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04284 - - lang:109328513 233.417