Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04281 ATGGTGCTGATTGATGATAAGGGTGCCAAGATTCATGCTTCTATTAAGAAGCGGCTGTTGTATATGTTTGATTCCAAGATTGTAGAAGTTTGTAGTCATACCCATGACTATGAATTTCTGGTTGGTGTTATTGGCTTAATGACTGGGATTTCTGCGGAAAGGGAATACATAAGGGATGGAAAGATTACTAAGATGGTTATTGTTGAGTTAACTGATGCTAGTGGTAAATGTGAATGTGCTTTGTTTGGTGACTATGTCACTGAGTTGAACAAGAAAATGGGGAAGGCTGATGAAGGGCTTCCAGTGATTGTTGTTCAGTTTGCAAAAATCAAGACATTCAGAGATCAAGCATCTATTCAAAATGTAATCAATGCCACCAGGATTTTCATAAATCCTGAGATCCCCGAAGCTATTGAGTTTAAAAATAGCATCGCTCTGCATGGGATTGATATGGAATCCCTTATTCCTGTGATTGGAGGGAGGGCTAAACCTACTATGGAAGAAGAGTTTCTTCGTATGCACCCAAAAAAGAAAGTTGTTGATCTCAGTGACTTGGAGGAAGGGGGAATGTTTGCTGTATATGGAGTTGTATCTGGAATAGTTCAAGGTGAAGACTGGTGGTACCCAGCCTGCAAGTGTCATAAGGTTGTGCTTCCTGATTCTGGTGCTTACTACTGCAATGGATGCTCCCGACATGTTTTCCAATGTATCCCTAGGTTCAGGGTTAAGGTTGAGGTATCGGACGGTGATTCAACATTTGTTTTTGTTCTTTTTGATTCTGACATGAGTTATATACTCGAGAAAGCATGTGCTCATTTTGTTGGAAAAGCAAAGGTACCCAATGGAGGTTCCGTCCCGCCTGAGTTTGATTCATTGATTGGCTCTGAGGGCCCTTTCAATACTCCTGTAAAGGCAATTGAAATTAACTCTGACAATGACTTGGATGATGTTGACATTGTTAAGACACTTAGGGAATTATTAAAGAGTAATGATACTGGAGTATTTGTGGTCCTTGCTTCGTTTGTTTCTGTCGAAGAAGGTGTTGATGCTTGGTTTAGATTGAAACTCAAGGTTGAAGATGGCCACGAATTTGCTATTTTCTCTCTGTATGATTCTGATGTTGAGTTCTTGGCTATGGAGACTTGCCCTGTTTTGCATTCCATGGGTGAATCTTGCTCATTATTCCCTGATGAAATGGATTGTTATTTTGGCGATTCGATTCTTTATAAGGTTCAAAGGGATTGCTCTGTATTAGATGAGAAGATTCCTCATTTTAAAGTTATTTCCATATGCAATGAGGTTGCAGTTGTTGATAAATTCATTGATGACTACTTATCTAGCGATGAAAATATTGATCCAGTTTTTGGTTTTGAGAAAACTATTAGTTCTTCTGGTGTGCAAAATTGTGTTCCCATTGTAGCGCAAAGTAATGCTGCGTCTGAGCGAAAAACACCAGTTCATCTAGATGAATCAATTAGCTCTCATGCTGGGATTTTGCACGCAAAATTGAATTCAAACACACGGGACAAGTGCGAGATTTTTGGTGTTCATAGCTCAAATACTGAGTCAACTCTAAGGGGAAGGAGCCTCAACTAA 1596 0.396 MVLIDDKGAKIHASIKKRLLYMFDSKIVEVCSHTHDYEFLVGVIGLMTGISAEREYIRDGKITKMVIVELTDASGKCECALFGDYVTELNKKMGKADEGLPVIVVQFAKIKTFRDQASIQNVINATRIFINPEIPEAIEFKNSIALHGIDMESLIPVIGGRAKPTMEEEFLRMHPKKKVVDLSDLEEGGMFAVYGVVSGIVQGEDWWYPACKCHKVVLPDSGAYYCNGCSRHVFQCIPRFRVKVEVSDGDSTFVFVLFDSDMSYILEKACAHFVGKAKVPNGGSVPPEFDSLIGSEGPFNTPVKAIEINSDNDLDDVDIVKTLRELLKSNDTGVFVVLASFVSVEEGVDAWFRLKLKVEDGHEFAIFSLYDSDVEFLAMETCPVLHSMGESCSLFPDEMDCYFGDSILYKVQRDCSVLDEKIPHFKVISICNEVAVVDKFIDDYLSSDENIDPVFGFEKTISSSGVQNCVPIVAQSNAASERKTPVHLDESISSHAGILHAKLNSNTRDKCEIFGVHSSNTESTLRGRSLN 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04281 531 Gene3D - 162 331 IPR012340 -
Trre1g04281 531 Pfam Replication factor-A C terminal domain 190 268 IPR013955 -
Trre1g04281 531 SUPERFAMILY Nucleic acid-binding proteins 182 305 IPR012340 -
Trre1g04281 531 CDD RPA1_DBD_B_like 43 141 - -
Trre1g04281 531 CDD RPA1_DBD_C 181 329 IPR047192 -
Trre1g04281 531 Gene3D - 25 152 IPR012340 -
Trre1g04281 531 SUPERFAMILY Nucleic acid-binding proteins 36 151 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04281 Trre-Chr1 48462380 48468037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04281 40 266 Core DNA Replication Machinery Family AT5G61000 25.833 1.81e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04281 - - tpra:123904946 373.244