Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04280 ATGAGTTCTGGTGAGAAAAAATCTCTTCTTGGTTACGACAATCTCATCCCGTCCAAGGGTGATTTGAGCGAAGGAACTTTTAAGGTGAGGGTTTTGAAAAAATGGCTTGTGTACGATGTGGTTGTTCCTGGAAAGATCCTCTCCGTGGATATGATTTTAACGGATAACAATGGCCACCAAATCGTTGCTTCCATTCCCGAATCTTTGCGTTCTGTGTTCGATTTCCAGTTGGTGGAAGGAAACATCTATACACTATCCAACTTATCTCTTAAGTCCAACGATGGTTCTATTTCTGCGAGTTTGCATGATCGGGTGTTGGAGTTCAACTATCGAACTGTTCTTAAGTTGTTCTGGGCTTATGGAATGCCTCATACTGGCGATTCATTTGCTCCTTCTAATCCTTCTGATAGGATGGATCAGAGTCTCAATTATATGTTGAATGTTTTTGGAGTTGTTACTTATATCAGACACGAGAAAAGTTTTTTTCTTAATGGTTCTACCACAAAGACTCTGAATTTGAAACTTACTGATAACAGTGAATGTAGTGATACTTTTGAAGTTGTGCTTTCTGGAGATTTAGTTGATCAATTTCGCGATGAGGTGGAAAACATTCCAATGGGTTTGCCTCTGATTGCTTTGCAACGTGCAAGAGTTTATGAAACCCAAGGTAAAACTGTGATCCAGAGCGTCCATGGTGTTACTAAGCTCTTTGTTAATCCCCAGTTCAGTGAGGCCAAAAAGTTTAGGAAGAGTCTTGTGCTTGCCTTGAACAAAACTAAGAAAAAGTTTGGCATTCCTCCATGTGAGAAACCCATGGTCTTCAACTTAGAAACCCCTTACCAGTTTAAATCAATTGCTCAGCTCAAGGGAGATTCAAAGTTTGGTATCTTTGTTGTTAGTGCAAGACTTGCTGACATGTCTGCTGTAAATGCTTGGTGGTACCCTGTTTGCCATTGTGATGTTATCATTGAGTCTTATATTGGATCGTTTTTCTGTCATAAGTGTCATGCCACTGATTTTGAACCAATGCGCAAGTATAGGGCAAAACTGGTTATTCAGGATGAAAGTGGCACTCTCCAGCTCGAATCATTTGATGATGTTCTCCTCCCTGTTGCTACTTATAATCCTAAGAAGCCGGGCATTGCTAGGTATTATTTCCCAAGGGCATTTGATCACATTACCGGAAAGAAGATTATTTACATGATTGAGAAGAAGAAACAAAGTCCTGCCAGCAACAATGAAGTGTATGAGCTTCTTTGTGTATCTGATGATTGGAAAGTTATTGATCATTTTCTTCAAACTTCAAAGATGGTTTCAAACATTATGGATGCAAATTGTGATTTAATCAAGACAGCCATGTTTGAATCCACCCTGTCCACCACTGAGCGTAGCTTTTCTAACTACATGGTTCCTATTGCTGCTAGAAGTTCAAAGTCTGAGGTTGGTGAGAGTTCAACCTCTGGAGCTAAAATGTCAAGCATTGCAGACGTTCTTTCAAGATCTGTTCGTGCTAGGGTCCGGCGTTAG 1527 0.4028 MSSGEKKSLLGYDNLIPSKGDLSEGTFKVRVLKKWLVYDVVVPGKILSVDMILTDNNGHQIVASIPESLRSVFDFQLVEGNIYTLSNLSLKSNDGSISASLHDRVLEFNYRTVLKLFWAYGMPHTGDSFAPSNPSDRMDQSLNYMLNVFGVVTYIRHEKSFFLNGSTTKTLNLKLTDNSECSDTFEVVLSGDLVDQFRDEVENIPMGLPLIALQRARVYETQGKTVIQSVHGVTKLFVNPQFSEAKKFRKSLVLALNKTKKKFGIPPCEKPMVFNLETPYQFKSIAQLKGDSKFGIFVVSARLADMSAVNAWWYPVCHCDVIIESYIGSFFCHKCHATDFEPMRKYRAKLVIQDESGTLQLESFDDVLLPVATYNPKKPGIARYYFPRAFDHITGKKIIYMIEKKKQSPASNNEVYELLCVSDDWKVIDHFLQTSKMVSNIMDANCDLIKTAMFESTLSTTERSFSNYMVPIAARSSKSEVGESSTSGAKMSSIADVLSRSVRARVRR 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04280 508 CDD RPA1_DBD_A_like 28 113 - -
Trre1g04280 508 SUPERFAMILY Nucleic acid-binding proteins 280 402 IPR012340 -
Trre1g04280 508 Gene3D - 129 253 IPR012340 -
Trre1g04280 508 Gene3D - 16 117 IPR012340 -
Trre1g04280 508 SUPERFAMILY Nucleic acid-binding proteins 26 115 IPR012340 -
Trre1g04280 508 Gene3D - 275 422 IPR012340 -
Trre1g04280 508 CDD RPA1_DBD_B_like 147 252 - -
Trre1g04280 508 SUPERFAMILY Nucleic acid-binding proteins 141 252 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04280 Trre-Chr1 48459276 48461534 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04280 44 366 Core DNA Replication Machinery Family AT2G06510 23.460 6.48e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04280 - - tpra:123922259 393.275