Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04272 ATGGCACCCAAATCCAAAACCCGCGCCTCCTCCGAAGCTTCTGAATTCTTCAAACCTGGAACCTTGGTTGAAGTCAGCTCCGACGACGACGGATTCCGCGGTTCTTGGTTCACCGGCAAGATCCTCCGCCGTGTCTCCGCCGACAAATTCATGGTCGAGTATGACAACTTGATGGAAGACGATAAACGCAAAAAACCTTTGAAAGAAAGCCTCAAGCGTCAACAGCTCCGACCAATTCTCCCGACGGAGACTAACCGTGAATTCAAATTCGGCGACGAAGTTGATGCGTATCATAATGATGGATGGTGGGAGGGTTACATTACCGAGGAATTGAAGGATGGAAGATTTTCTGTGTATTTCAGAGTCTCGAGGGAGCAGATCGTGTTCACTAAGGAGGAACTCAGACTTCACCGTGAATGGATCGATGAAAAATGGGTTCCACCATTTCAACAACAGGAGGATAATGATAATGATAATGATAATGAAACTGAGAAAACGAAGCGTGTGAAGGCTGCTGAAACTGTGACGGTAGAGAAGGATGATTTTAAGTTTAAGGAAGGGGCATTGGTTGAGGTTTGTAGCGACGAAGATGGTTTCAAAGGGGCTTGGTTTTGTGCCACCATTGTTGAGTTAAAGGGTAGATCTAAGTTTGCTGTTGAGTACGATAGCCTGCTTGACGATGATTCAAAACTATTGAGAGAGGAGATTAGTCTCTTGCATATCAGGCCTCGTCCTCCAATAACTGCTGATGTTGCTGAGTTCAAATTTCTTGACGAAGTTGATGCTTTTTACAATGACGGTTGGTGGGTTGGTCTTGTTGCGAAAGTTCTTGGGGACTCCAAGTATATTGTTTATTTCAGGAACTCCAACGAAGAGCTGGAGTTTCAGCATTCTCAGTTGAGGCTACATCAGGATTGGATGGATGGCAAATGGGTCATGGCTTCTAAGGCATTGAAATATTGA 963 0.4507 MAPKSKTRASSEASEFFKPGTLVEVSSDDDGFRGSWFTGKILRRVSADKFMVEYDNLMEDDKRKKPLKESLKRQQLRPILPTETNREFKFGDEVDAYHNDGWWEGYITEELKDGRFSVYFRVSREQIVFTKEELRLHREWIDEKWVPPFQQQEDNDNDNDNETEKTKRVKAAETVTVEKDDFKFKEGALVEVCSDEDGFKGAWFCATIVELKGRSKFAVEYDSLLDDDSKLLREEISLLHIRPRPPITADVAEFKFLDEVDAFYNDGWWVGLVAKVLGDSKYIVYFRNSNEELEFQHSQLRLHQDWMDGKWVMASKALKY 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04272 320 MobiDBLite consensus disorder prediction 148 167 - -
Trre1g04272 320 Gene3D - 171 254 - -
Trre1g04272 320 CDD Tudor_Agenet_AtDUF_rpt1_3 184 246 - -
Trre1g04272 320 CDD Tudor_Agenet_AtDUF_rpt2_4 257 302 - -
Trre1g04272 320 Pfam Agenet domain 187 246 IPR008395 -
Trre1g04272 320 Pfam Agenet domain 20 81 IPR008395 -
Trre1g04272 320 Pfam Agenet domain 91 149 IPR008395 -
Trre1g04272 320 SMART agenet_At_2 15 84 IPR014002 -
Trre1g04272 320 SMART agenet_At_2 252 308 IPR014002 -
Trre1g04272 320 SMART agenet_At_2 182 249 IPR014002 -
Trre1g04272 320 SMART agenet_At_2 86 142 IPR014002 -
Trre1g04272 320 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 179 316 - -
Trre1g04272 320 CDD Tudor_Agenet_AtDUF_rpt2_4 91 136 - -
Trre1g04272 320 CDD Tudor_Agenet_AtDUF_rpt1_3 17 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04272 Trre-Chr1 48365526 48368843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04272 194 306 PHD Transcription Factor Family AT5G58610 31.852 1.09e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04272 - - vum:124823040 414.846