Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04269 ATGTCCGACGACAAACCCGCCACAGACCAATACGGCGTCCTTCTCTATTACAACTACGTCGATATTCCAAATCTTGACGACCTCCTCACATTCTACCGTTCCAATTGCTCCTCTCTCTCCCTCCTCGGTCGTGTTCGCCTCTCTTCCCACGGCGTCAATGTCACTGTTGGTGGCAATTTATCCTCTTTGGAACGACACATTGAAGACCTCAAAGCTAATAGTAATTTATTTCATGGAACTGATTTTAAGCTTGCAACTTGTCATCAACCGTTAAACGATGATGTTGCTAAGGAGTGTGGATTCACTTCACTCTCGATTCGAATTGTCAAGGAACTTGTTACTCTGAGTTCTCATCCACTATTGAAGTCACCAGAAATTTCCAATGCTGGAAGACATTTATCAGCACTTGAGTTTCATTCAACCCTTCACAATGCTAATAAGGAGAGTCCAGAAAACAGTCTTGTTTTACTTGATGCAAGGAATCTGTATGAAACAAGGATTGGGAAATTTCATGCACCAAATGTTGAAACTCTGGATCCGCAGGTTAGGCAGTACAGTGATTTCTCCTCGTGGATAGATGATAGAAGTCAGCAGTTGAAAGGCAAAAATATCCTCATGTATTGTACTGGTGGAATCAGGTGCGAAATGGCATCAGCATATATTAAGTCAAAAGGTGCTGGGTTTGAGAATGTGTTTCAGTTATTTGGTGGTATACAACGCTATTTGGAGCAATTCCCAGATGGTGGTTATTTCAAAGGAAAGAATTTTGTTTTTGATCACCGGATATCAGTTGGAGGTTCAGATGCTAGTACAATTGGTACCTGTCTTATATGTCAATGTTCCTTTGACGATTACTCTTCACGCTGTCGATGTACTTATTGCAGAATGCTAGTCTTGGTTTGCCATAGTTGCCAGAATGAATCTGCGCTGTACGTTTGTGAGCTATGCCAAAAACAGGGTAAGGCTGGGTCAAAGCAGTTAATTGAAAATGATGATTCAAAAAAATCTCTACCAGATGTTGAGTTTCAAAAAAATCTGTTATCTTCAGATACTATGCTCTTGCCTCAAGCGCCTAGAGGGGATGACGTAAGCACCTCAAGAAAACTGAGAATCTTATGTTTGCACGGGTTTCGGCAGAATGCTTCCAGTTTTAAGGGGAGAACAGCATCGTTAGCCAAAAAACTCAAGAAAATTGCTGAATTTGTTTTTATAGACGCACCTCATGAAGTGCCCTTCATTTATCAAACACCAGTGCAAGTGCCCCATGTGAATGGTGCATTGCCCTCTTTGCCAGCTAGTCCACCTCCACCTTTGGAGAATTGCAAGAAGAAGTTCGCATGGTTTGTAGCACCCGATTTTGATGGAAGTAGTGGTGCTGAGTGGAAGGTAGCAAATGGTCCATTTGATCCACTTCAATACCAGCAACAAACTGGTGGATATGATATTTCAATATCACACTTAGAGAATGTGTTCTCCCAAGAAGGGCCATTTGATGGAATCTTGGGATTCTCACAGGGAGCAGCAATGACTGCAGTAATCTCTGCACAACAAGAAAAGTTAAAAGGTAAAATGGACTTTAAATTTGTAGTCTTGTGCTCAGGCTTTGCTCTGCATTTGAAGGAGATGGAGTGTAGCCCTATCAAGTGTCCTTCTCTTCATATTTTTGGTAATGAACATGGTCAAGACAGACAGATAGCCAACCAAACAAGCAAGGAACTTGCTTCTCTATATGACAGTGGTTGTTCTGTGATCGTTGAACATGACTGTGGTCATATAATTCCTACTCGGTCCCCATATATTGACGAGATCAAGACTTTCCTTGGGCGATTTCTGTAA 1836 0.4172 MSDDKPATDQYGVLLYYNYVDIPNLDDLLTFYRSNCSSLSLLGRVRLSSHGVNVTVGGNLSSLERHIEDLKANSNLFHGTDFKLATCHQPLNDDVAKECGFTSLSIRIVKELVTLSSHPLLKSPEISNAGRHLSALEFHSTLHNANKESPENSLVLLDARNLYETRIGKFHAPNVETLDPQVRQYSDFSSWIDDRSQQLKGKNILMYCTGGIRCEMASAYIKSKGAGFENVFQLFGGIQRYLEQFPDGGYFKGKNFVFDHRISVGGSDASTIGTCLICQCSFDDYSSRCRCTYCRMLVLVCHSCQNESALYVCELCQKQGKAGSKQLIENDDSKKSLPDVEFQKNLLSSDTMLLPQAPRGDDVSTSRKLRILCLHGFRQNASSFKGRTASLAKKLKKIAEFVFIDAPHEVPFIYQTPVQVPHVNGALPSLPASPPPPLENCKKKFAWFVAPDFDGSSGAEWKVANGPFDPLQYQQQTGGYDISISHLENVFSQEGPFDGILGFSQGAAMTAVISAQQEKLKGKMDFKFVVLCSGFALHLKEMECSPIKCPSLHIFGNEHGQDRQIANQTSKELASLYDSGCSVIVEHDCGHIIPTRSPYIDEIKTFLGRFL 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04269 611 FunFam esterase OVCA2 isoform X6 365 611 - -
Trre1g04269 611 Gene3D - 122 277 IPR036873 -
Trre1g04269 611 Pfam Serine hydrolase (FSH1) 367 602 IPR005645 -
Trre1g04269 611 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 120 264 IPR036873 -
Trre1g04269 611 Gene3D alpha/beta hydrolase 364 611 IPR029058 -
Trre1g04269 611 Gene3D - 1 113 - -
Trre1g04269 611 FunFam Rhodanese-like domain-containing protein 6 2 113 - -
Trre1g04269 611 Pfam UPF0176 acylphosphatase like domain 12 111 IPR040503 -
Trre1g04269 611 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 5 610 IPR020936 -
Trre1g04269 611 FunFam Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 120 278 - -
Trre1g04269 611 SUPERFAMILY alpha/beta-Hydrolases 365 611 IPR029058 -
Trre1g04269 611 Pfam Rhodanase C-terminal 252 317 IPR022111 -
Trre1g04269 611 SMART rhod_4 140 247 IPR001763 -
Trre1g04269 611 ProSiteProfiles Rhodanese domain profile. 150 250 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04269 Trre-Chr1 48343280 48346767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04269 9 611 Sulfurtransferasese or Rhodanese AT1G09280 62.768 0.0 765
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04269 - - mtr:25484701 1137.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04269 1 48343280 48346767 Trre1g04269 1 48343280 48346767 ECH