Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04261 ATGGATTCATTCCAACCAAACATAGATTCAGATACCTTTCAAGAATCCAATCACAAGAAACGCCGCAAAATCGGAAACCTAACAACCGATCAAAATTCCCTAAATCTCATGCCATGGAGATCCGAATCAGACCAAAATACCTACTCCAAAAAACTCATCGAAGCTCTCCGCCGGATTAATTCACCGGAGACAACCAAACCTAGAGTCGCCGGTCAAGTCCGTGAAACCGCCGATCGAGTTCTCGCCGCAACTGCTAAAGGAAGAACACGCTGGAGCCGCGCGATTCTTGGACGGTGGAAGAAGCTTCGTAGACATCACAGGAAAGTGAAGAAAGCTGGTAGTGGATTGAATAGAACGGGGATTGAAAGAGAGAGGATAAGACGGTTACCGGCTGTGCAGAAGAAAACACGCGTTCTAGGCCGGTTGGTTCCTGGTTGCCGGAAAGTTCCTTTGCCGAATCTTCTAGAAGAAGCTACTGATTATATTTCTGCTTTGGAGATGCAAGTGCGTGCTATGACAGCTCTCGCTGAGCTTCTCGCCGGCGGTACATCGGCGGGGATCGCCGGTCAGGTGTTGAGTTGA 582 0.4897 MDSFQPNIDSDTFQESNHKKRRKIGNLTTDQNSLNLMPWRSESDQNTYSKKLIEALRRINSPETTKPRVAGQVRETADRVLAATAKGRTRWSRAILGRWKKLRRHHRKVKKAGSGLNRTGIERERIRRLPAVQKKTRVLGRLVPGCRKVPLPNLLEEATDYISALEMQVRAMTALAELLAGGTSAGIAGQVLS 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04261 193 MobiDBLite consensus disorder prediction 1 29 - -
Trre1g04261 193 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 181 IPR036638 GO:0046983
Trre1g04261 193 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 41 179 IPR044660 GO:0006355
Trre1g04261 193 CDD bHLH_AtIBH1_like 121 176 IPR044549 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04261 Trre-Chr1 48164585 48165166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04261 1 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 44.211 2.33e-38 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04261 - - gmx:100783462 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04261 1 48164585 48165166 Trre1g04261 1 48164585 48165166 ECH