Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04260 ATGGAAACCAACACTATGATTCCATCACTATCAGATACCAAACTCACCAATGTTGTTCTCTCCAACGGGAAACACTACTCTTCTCCTGATGACTTAGAGACCTTCTACCTCAAACTTACTGACTTGTTGGATTCCTCTGGCCTCACTCTCATTTTCAATGCCAAAGAAACATCCTTAGACTTGTACCTGTTTTACTTGGAGGTCACCAGAAGAGGAGGTTATCACCAGGTTGGTCAACAAAAGAAATGGGGTGAAGTTGTTTCAGCACTAAAACTGGAAGGCAACAATGTAAAGTTATGTGCTCAAGTTGAAAAGCTCTATGCACTTCTTTTATACAAATTCGAGAAATTGTACTTCTATAGGTTTCCTGCAACTCAAACTGCAACTGGCAGCACCAAAGTTACAAGGAAGGAGAACTCGACAACTAGTTTATCTCAATTAATGGATGATGGAGATTATCTGACGGCGGCAAGGCTGTCCAAGGACTACCCTATCAAAAAACTGACAGCAATACCTCCTCCGGTGCTTCTACAAACACCCTCGAAAGACAAAGAAACGAAGAAACGGCGAGGTGCTCCAACGGGGAGAAGTGGATATCAAATATTCCTCAAGCAGGAATGTGCTCGATTAAAAGCTTGTTGCCAGGACATAGATGGCAAAACAATCCTACGCACGGCTGTCGAAGCATGGAACAAGATGTCCGACAATGATAAACAGCCATATGTGGAAGAAAGCAAGAAGATAAAGGAACAAAATAAGGAAGCAAAAATGATCATCGACAATAAGCAGAAGGAACAAAATAAGGAAGCAATTATCATTGACAATAAGAAGAACACTCAAGATCTTAAAAGGGATGAAAAGAGGCCTAATGTGTCTGGTGGTGACTACTACTGCGTACCTTCGCAACCTCTACCAAATGCAACAGTGGACTTAGCTCTTAAAATGACAGAAAAAACATCCAAGGATCCCATCTTCCCAGTTGATTTGGATGCTTATCGTTCCGTAGATTTGCCATCTGGGGTATTTATGTAA 1032 0.4147 METNTMIPSLSDTKLTNVVLSNGKHYSSPDDLETFYLKLTDLLDSSGLTLIFNAKETSLDLYLFYLEVTRRGGYHQVGQQKKWGEVVSALKLEGNNVKLCAQVEKLYALLLYKFEKLYFYRFPATQTATGSTKVTRKENSTTSLSQLMDDGDYLTAARLSKDYPIKKLTAIPPPVLLQTPSKDKETKKRRGAPTGRSGYQIFLKQECARLKACCQDIDGKTILRTAVEAWNKMSDNDKQPYVEESKKIKEQNKEAKMIIDNKQKEQNKEAIIIDNKKNTQDLKRDEKRPNVSGGDYYCVPSQPLPNATVDLALKMTEKTSKDPIFPVDLDAYRSVDLPSGVFM 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04260 343 CDD HMG-box_SF 196 251 - -
Trre1g04260 343 Gene3D - 19 139 IPR036431 GO:0003677
Trre1g04260 343 Pfam HMG (high mobility group) box 196 255 IPR009071 -
Trre1g04260 343 SUPERFAMILY ARID-like 29 120 IPR036431 GO:0003677
Trre1g04260 343 CDD ARID 33 115 - -
Trre1g04260 343 SMART hmgende2 192 261 IPR009071 -
Trre1g04260 343 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 181 284 - -
Trre1g04260 343 SUPERFAMILY HMG-box 180 253 IPR036910 -
Trre1g04260 343 MobiDBLite consensus disorder prediction 176 195 - -
Trre1g04260 343 Coils Coil 245 268 - -
Trre1g04260 343 ProSiteProfiles ARID domain profile. 22 119 IPR001606 GO:0003677
Trre1g04260 343 Pfam ARID/BRIGHT DNA binding domain 33 115 IPR001606 GO:0003677
Trre1g04260 343 SMART bright_3 30 120 IPR001606 GO:0003677
Trre1g04260 343 Gene3D High mobility group box domain 178 258 IPR036910 -
Trre1g04260 343 SMART ARID_2 26 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04260 Trre-Chr1 48145219 48147721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04260 35 241 ARID Transcription Factor Family AT3G13350 22.727 3.90e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre1g04260 ARID 2.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04260 - - mtr:120577736 365.155