Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04254 ATGGATTTTCAGGGATTCTTAAACGACTTGCAGGATTGGGAACTTTCTACAAAGGATAAAGCGACTAAAACCAAGTTACAAAAGGAAAATAAATTCACAAAGGGTTCATCTGCTCGGAGTGATGGATCAGTGGGTGTGGAGAATAAATCGAGAGGAGATACTATTTCTTTTGATCATGCGAGAAATACCTCAGCTAAGTACGATTTCTCAAGAAATAGTGACGTGCTGAGTCGTGTGAGTAGTAGTTTTGCTTCTGAAGATGTTCCTGATGCTGCATCTGAGAAAGACTTGGGTAATGAGTTTTTCAAACAGAAGAAGTTTAAGGAAGCTATTGATTGTTATTCAAGGAGCATCGCCTTCTCACCAACTGCTGTAGCATATGCAAATAGGGCAATGGCCCATATAAAGCTAAGAAGATTTCAAGAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTCGACGATCGTTACATAAAAGCATACTCACGGCGAGCAACAGCTAGAAAAGAACTTGGGAAAAATAAAGAATCCATGGAAGATGCCGAATTTGCCATGAGGTTGGAACCTAACAATCAAGAAGTCAAGAAACAGTATGCTGATGCCAAGTCACTGTACGAGAAAGATTTTCAGGGATTCTTAAACGACTTGCAGGATTGGGAACTTTCTACAAAGGATAAAGCGACTAAAACCAAGTTACAAAAGGAAAATAAATTCACAAAGGGTTCATCTGCTCGGAGTGATGGATCAGTGGGTGTGGAGAATAAATCGAGAGGAGATACTATTTCTTTTGATCATGCGAGAAATACCTCAGCTAAGTACGATTTCTCAAGAAATAGTGACGTGCTGAGTCGTGTGAGTAGTAGTTTTGCTTCTGAAGATGTTCCTGATGCTGCATCTGAGAAAGACTTGGGTAATGAGTTTTTCAAACAGAAGAAGTTTAAGGAAGCTATTGATTGTTATTCAAGGAGCATCGCCTTCTCACCAACTGCTGTAGCATATGCAAATAGGGCAATGGCCCATATAAAGCTAAGAAGATTTCAAGAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTCGACGATCGTTACATAAAAGCATACTCACGGCGAGCAACAGCTAGAAAAGAACTTGGGAAAAATAAAGAATCCATGGAAGATGCCGAATTTGCCATGAGGTTGGAACCTAACAATCAAGAAGTCAAGAAACAGTATGCTGATGCCAAGTCACTGTACGAGAAAGAAATTGTACATAAAGCATCGACAGCCCTAAGAAACACTGTAGAAAAAGTGGGAAAGTCCAAGACAAAAGTTAATGGTAGCAGCAGCATCCACTCTGTTTCACATGGTAATCAAAAGTCAGGGCCAACTGAATCTCATCATCAAACAAAGGGTAATGAACAGAAAATTCCTGCTAAAGAATCACTCTTATTGGAGGAGATCAACAACAAGGATACAAAATCCGGAAGCAGGACCCAAGGACAAGTAGGCAATGGTTCTAAGGAAGGTTATAATGCAAGCAAAAACTTGGAACAGAGAAATCACAAAACTAGAAAGCCGGAAATGAAACCATCGGTTGAACAACTTGCATCTCGAGCTGCTTCTCGCGCCATGGCTGAAGCTGCAAAAAACATAACACCACCAACTACAGCTTATCAATTTGAGGTCTCTTGGAGAGGGTTTTCAGGTGACCGTGCTTTGCAGGCTTGTTTGCTAAAGGCAACGTCTCCCCATGAATTACCGAAAATATTCAAAAATGCCTTATCTTCTACCCTGCTAATTGAGATAATCAAGTGTGTTGCATCCTTTTTCACTGAAGACATGGACCTAGTTGTCAGTTATTTGGATAATTTGACCAAGGTACCGAGATTTGATGTGATCGTAATGTGCCTTCCATCAGCAGCTAAGGAAGATTTGCGCAAGATCTGGAATGAAGTGTTCTGTAGTGAAGCAACTCCGATGGAGTATGCAGAGATTCTGAACAACCTCCGGTCAAAATTCTACCTTGGATAG 2010 0.4095 MDFQGFLNDLQDWELSTKDKATKTKLQKENKFTKGSSARSDGSVGVENKSRGDTISFDHARNTSAKYDFSRNSDVLSRVSSSFASEDVPDAASEKDLGNEFFKQKKFKEAIDCYSRSIAFSPTAVAYANRAMAHIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKNKESMEDAEFAMRLEPNNQEVKKQYADAKSLYEKDFQGFLNDLQDWELSTKDKATKTKLQKENKFTKGSSARSDGSVGVENKSRGDTISFDHARNTSAKYDFSRNSDVLSRVSSSFASEDVPDAASEKDLGNEFFKQKKFKEAIDCYSRSIAFSPTAVAYANRAMAHIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKNKESMEDAEFAMRLEPNNQEVKKQYADAKSLYEKEIVHKASTALRNTVEKVGKSKTKVNGSSSIHSVSHGNQKSGPTESHHQTKGNEQKIPAKESLLLEEINNKDTKSGSRTQGQVGNGSKEGYNASKNLEQRNHKTRKPEMKPSVEQLASRAASRAMAEAAKNITPPTTAYQFEVSWRGFSGDRALQACLLKATSPHELPKIFKNALSSTLLIEIIKCVASFFTEDMDLVVSYLDNLTKVPRFDVIVMCLPSAAKEDLRKIWNEVFCSEATPMEYAEILNNLRSKFYLG 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04254 669 ProSiteProfiles TPR repeat profile. 91 124 IPR019734 GO:0005515
Trre1g04254 669 MobiDBLite consensus disorder prediction 427 458 - -
Trre1g04254 669 MobiDBLite consensus disorder prediction 486 506 - -
Trre1g04254 669 Gene3D Tetratricopeptide repeat domain 285 395 IPR011990 GO:0005515
Trre1g04254 669 Gene3D Tetratricopeptide repeat domain 79 189 IPR011990 GO:0005515
Trre1g04254 669 ProSiteProfiles TPR repeat profile. 297 330 IPR019734 GO:0005515
Trre1g04254 669 MobiDBLite consensus disorder prediction 242 256 - -
Trre1g04254 669 MobiDBLite consensus disorder prediction 26 57 - -
Trre1g04254 669 Pfam Tetratricopeptide repeat 126 154 IPR019734 GO:0005515
Trre1g04254 669 Pfam Tetratricopeptide repeat 332 360 IPR019734 GO:0005515
Trre1g04254 669 PANTHER OS05G0129900 PROTEIN 207 668 - -
Trre1g04254 669 SUPERFAMILY TPR-like 293 409 IPR011990 GO:0005515
Trre1g04254 669 Pfam Potential Monad-binding region of RPAP3 546 635 IPR025986 -
Trre1g04254 669 MobiDBLite consensus disorder prediction 427 533 - -
Trre1g04254 669 MobiDBLite consensus disorder prediction 507 524 - -
Trre1g04254 669 SUPERFAMILY TPR-like 87 203 IPR011990 GO:0005515
Trre1g04254 669 SMART tpr_5 125 157 IPR019734 GO:0005515
Trre1g04254 669 SMART tpr_5 158 191 IPR019734 GO:0005515
Trre1g04254 669 SMART tpr_5 91 124 IPR019734 GO:0005515
Trre1g04254 669 SMART tpr_5 297 330 IPR019734 GO:0005515
Trre1g04254 669 SMART tpr_5 364 397 IPR019734 GO:0005515
Trre1g04254 669 SMART tpr_5 331 363 IPR019734 GO:0005515
Trre1g04254 669 MobiDBLite consensus disorder prediction 232 261 - -
Trre1g04254 669 MobiDBLite consensus disorder prediction 36 50 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04254 301 367 U-box Gene Family AT3G07370 41.176 1.05e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04254 K23002 - gmx:100784528 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04254 1 48076642 48086168 Trre1g04254 1 48076642 48086168 ECH