Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04251 ATGGCATATAGTTACGTGGGTGATTGTTGTCATGTATTGTTGGAAAGGAAAAAGCAAACAACAACGTCTGATATTTTTCAGCATCTAGGTGGAGGAGGAGGAGGAGGTGGTGCTAATAATAATAATAACTACCTTCTTCAAATGGATCTAATTGGATCAGATATATCGGATCGGATTCTCAAGAACCAGATCGCCACTCACCCCCTCTATCCAAATCTACTTTCTGCTTTTATTGATTGCCAAAAGGTTGGGGTACCATCAGAAGTTGCATCCCTTCTTGAAGAAATAGGGCGTGAAAGCCACCACAACAATACTCTCCGTCAGATTGGAGATGATCCTGACCTTGACCACTTCATGGAATCATACTGTGAAATTCTTCATAAATACAAAGAGGAATTGTCCAAGCCATTCAATGAAGCGACAATGTTTTTGTGTAATATTGAATCACAACTAAGCCAACTCTGCAATGGCACACAACAAGCAATGTCATCTGATTATAACAACCGTTCAGATGAGGCAGCAGGGACATCGGAGGATGAATTGAGTTGTGGAAGGGTTGAAGCAGTAGAAGTTCATCATGAAATTTGTGGCACATCATGTCAAGGTGATAAAGAGCTTAAAGAAATGCTCCTTCGTAAATATGGAGGTTATCTTAGCAACTTGAGAAAAGAATTTCTAAAGAAAAGGAAAAAGGGTAAACTACCAAAGGATGCTAGAAAAGCTTTGATGGATTGGTGGAATGTTCACTATAGGTGGCCTTATCCCACGGAGGAGGAGAAAATGCAACTATCAGAAATTACTGGACTTGATATAAAGCAAATAAATAATTGGTTCATAAATCAGAGAAAAAGACATTGGAAACCATCTGAAGATATGAGATTCGCCATTATGGAGGGTGTAAGTAGCACCGGCATAACAGGACCTCTGTAA 930 0.3957 MAYSYVGDCCHVLLERKKQTTTSDIFQHLGGGGGGGGANNNNNYLLQMDLIGSDISDRILKNQIATHPLYPNLLSAFIDCQKVGVPSEVASLLEEIGRESHHNNTLRQIGDDPDLDHFMESYCEILHKYKEELSKPFNEATMFLCNIESQLSQLCNGTQQAMSSDYNNRSDEAAGTSEDELSCGRVEAVEVHHEICGTSCQGDKELKEMLLRKYGGYLSNLRKEFLKKRKKGKLPKDARKALMDWWNVHYRWPYPTEEEKMQLSEITGLDIKQINNWFINQRKRHWKPSEDMRFAIMEGVSSTGITGPL 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04251 309 SMART ELK_2 205 226 IPR005539 GO:0003677
Trre1g04251 309 ProSiteProfiles ELK domain profile. 205 225 IPR005539 GO:0003677
Trre1g04251 309 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Trre1g04251 309 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Trre1g04251 309 SMART HOX_1 227 292 IPR001356 GO:0003677
Trre1g04251 309 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 65 295 - -
Trre1g04251 309 Pfam ELK domain 205 226 IPR005539 GO:0003677
Trre1g04251 309 CDD homeodomain 237 289 IPR001356 GO:0003677
Trre1g04251 309 ProSiteProfiles 'Homeobox' domain profile. 225 288 IPR001356 GO:0003677
Trre1g04251 309 Pfam KNOX2 domain 108 155 IPR005541 GO:0003677|GO:0005634
Trre1g04251 309 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Trre1g04251 309 Gene3D - 223 297 - -
Trre1g04251 309 Pfam Homeobox KN domain 245 284 IPR008422 GO:0003677|GO:0006355
Trre1g04251 309 ProSitePatterns 'Homeobox' domain signature. 263 286 IPR017970 GO:0000981|GO:0006355
Trre1g04251 309 SUPERFAMILY Homeodomain-like 227 297 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04251 Trre-Chr1 48045610 48052212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04251 54 306 Homeobox Transcription Factor Family AT1G23380 52.290 3.39e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Trre1g04251 KNOX2 8.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04251 - - mtr:11406488 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04251 1 48045610 48052212 Trre1g04251 1 48045610 48052212 ECH