Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04249 ATGGATTGCAAGGAAGATCTATTGATCGAAGAAGTCTGCAAGCTCTATGATCAAATCTCAAGCCTAGACACACTCAAACCCTGCAAAAATGTCAACACACTTTTCACCAAACTTGTTCTCACATGCATGCCACCTAGTTCAATTGATGTCACCAAACTAACCACAAAAGTTCAAGAAATTAGGTCCAAACTCATAAGGCTATGTGGTGAAGCTGAAGGCCATTTAGAAAGCCACTACTCAACAATCATAGCTTCATACAATAATCCACTTAATAATCTCAACATTTTCCCCTATTATTCAAACTACCTCAAACTTAGTCTCCTTGAATTCAATATCCTAACCAAACACTCCACTAATGTCCCTAAAAAAATTGCCTTTATTGGCTCAGGTCCACTTCCCCTTACTTCAATTGTCCTAGCCACAAACCACCTTAAAAACACAATCTTTCACAACTATGACATTGACCCTTTAGCCAACTCAAAAGCTTCTTGCTTAATTTCCTCTGATCCTGATTTATCAAAGCGTATGGTTTTTCACACCAATGATATAATGGATGTGTCAAATGCTTTGAAAGAATATGAAGTTGTTTATTTGGCGGCACTTGTGGGAATGAATGTCGAGGAAAAAAATAGAATCATCGATCATTTAGCTAAGTACATGGCACCAGGAGCACTCCTCATGCTGAGGAGTGCTCACGGTGCTCGCGCTTTTCTGTATCCGGTTGTGGATACTAATGATCTCCGAGGTTTTGAGGTTCTCTCAGTGTTTCGTCCTACGGACGAGGTTATCAATTCAGTTGTCATAGCTCGCAAATATCCAATGGTTTTATTACCAAATAAGTGTTGTTCTGATGAGGTTCAAGCCTTCAAACCCCTGAGCAACCATGGCAATAACATGATTGAGGAATTGGTCGTTGAAGAGAATTAA 927 0.3948 MDCKEDLLIEEVCKLYDQISSLDTLKPCKNVNTLFTKLVLTCMPPSSIDVTKLTTKVQEIRSKLIRLCGEAEGHLESHYSTIIASYNNPLNNLNIFPYYSNYLKLSLLEFNILTKHSTNVPKKIAFIGSGPLPLTSIVLATNHLKNTIFHNYDIDPLANSKASCLISSDPDLSKRMVFHTNDIMDVSNALKEYEVVYLAALVGMNVEEKNRIIDHLAKYMAPGALLMLRSAHGARAFLYPVVDTNDLRGFEVLSVFRPTDEVINSVVIARKYPMVLLPNKCCSDEVQAFKPLSNHGNNMIEELVVEEN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04249 308 Pfam Nicotianamine synthase protein 5 273 IPR004298 GO:0030410|GO:0030418
Trre1g04249 308 PANTHER NICOTIANAMINE SYNTHASE 3 4 273 IPR004298 GO:0030410|GO:0030418
Trre1g04249 308 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 276 IPR004298 GO:0030410|GO:0030418
Trre1g04249 308 Gene3D Vaccinia Virus protein VP39 6 273 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04249 Trre-Chr1 47986973 47987899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04249 1 307 Nicotianamine Synthase Gene Family AT1G09240 59.810 1.37e-132 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04249 K05953 - gmx:100803630 460.685