Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04223 ATGAAGAAAAGACATTCCAAGGGAAGTTTCCTTAGCTTCTTTGATTGGAATGACAAATCTCAAAAGAAGCGATTTTGTCACATTCCTAAGTTACCTGATGTTTCAAATCAAGCAAAGGAAAACATGAAAATCATGCCAATGCCACAGATAAAGATAGATGAGAATGGAGAAAATACTACTAATATTGCAAGTAGTGATTTTAACTTTGCCTTATCAATTAATAGTGATGAAGAATGTGGGACTAATAAATCCCTAGGGCTAGTAGCCAGACTCATGGGTTTGGATTCACTTCCTGAAGTTCCAACTGTTTCTCTTGAATATTCTCAGTTTCATGAGATTAATCATCATTCGATGGCTCACTATTGCAATGTAGATTCCACAAACACAACACTTAAGTCGAACAAGTCTTTTTCGCGTGCCATTGAATCATCGACGACAATGAATAAATGTCAAAATGAAACTTTGCATCCAAGGTCTGCTAAATCTATTTCAGTTACTTGCAATAAACTTGTGTCTCCTATCAAATGTCATGGTTATATGCAATCTAAGAATGCATCATCATATATAAAGGGGGAAGATGATAAGATCATTGAGGCAAGTCGCCGATCATATATGAGGAACAGAATGTCTTCAGTTGGTTCTTTATCTGTTCCCTTGAGGACTCTTGATTTGCAAGAGAAATTGAAAGGGGCGCCGCACGGATCAAAGTTCAGTGTGAATGGAAAACCTAGTGCTAGGAGCAGCAAGTTATATAAGTCTAGTCCAACCACCATCGGTTCAAGAGATTCAGAAAATAATAATTCACGCCGAGGTAAAGGAAAATCTGGTTTGCTTGTAACATCGTCCAAAACCAATGTTCAAAGTAGGGATACGTTGAATTTGAATGGAAATAGGAGATACATGAAGCAGATAAATTGTCATGGCGAAAACAGCAATGTTCTTAGGCAGAATGGTGTGACCAACAAAGGTAAATTAACTTCAAAAGTGGACACTATTAAGGCAACACAAACCCATTCGTCAGGAAGTTCTACTCGAGCTAGGAACGCAACAAATAAATGTGCTGTTAATTCCAACATTGAATCCAAAAGGTCAAGCACAAGAGTAACTGATAAGCAAAAGGATTTTTCGGTATCAAAAAGAAAGAGTTCTTCCCAAAAGAAGAGGTATGATCAAAATGACGCACGATGTTCTGATAACACAGTTAATACTTATGAAAGAAGGTCCATAAAGTGTAATGTTACAATTGATGAAAGTCCTTACCAGGATACATTTAGCATGGAAGAAAGCAAGGATGTCATTTCATTTACATTTACATCTCCATTAAGGAAAAAAATGTCTAAGTCGCGAAAAATTAAGGTTTATCCTGAAAAATTATCATCATCTCCTACCAGGTTAAATGTAATAGATGTTGATGAATTAAGTCTCATGTTATCTCACATTAATCCACCTCAATGTACCTTGGAAACAGAAGGGTGTTCTGTTGGTTTTAAATCTATTTCGGAAGACAGATTTGACAGCATGGTATGCAACTCATCAAGGGAACATGACAATAGCTTTCACCTGAACCTGCTTAGTGATAAATTGGACATCATGGATGGCAATTTTTGTTCTTCAAGTGATAATATGATGCTTAACATGAATCAGCAATTTCAGATGTCACAACCAACCGAAGATTCGAGGTGTAGCAGCAATAGTGAAAGTGGAAATGGTTCATGTTATCAGCATACAAGAACTCTTACTACATTTGAAAATCATTTCATCAGTAAAACTTACTTGGATTGTAAAGATAGCACACATGGAGGCAGCGCCGTTTATTCTTCCATGCAAGATGAAGAAATACTTAGTTCTCAAATAAATGAATCTATATCAGCTAACTACAAGAAGAATTGGTCTGAGAAAAGCTCTACAATATCATCAAGGATGATGGAACTTGACTATGTAAAGGATATACTTAGCAATGCAGAATTGATAGAAGAAGAATTAGTATTGGGTGAGACAAACAATATAATAATGCCAACTCTCTTTGACCTTCTGGAGAATAAAAAAACAGGTGTAGAAATCTATGAAGAGTACTCTAAGCTTGAAAGGAAAGCTATATTTGATTGTGTAAGAGAGTGCTTAGAATTAAGATGTAGACAAGTTTTTACTACAAGGTGCAAAGCATGGCCTAGATGGGTGGAATCAGTTACTATGAGGAAGATGTGGTTAGCAGAAGAAGTGTATAAGGATATGTTGGAGTTTAGAAGCATGGAAGAAGAGGTAGTGATGGATGAGATTATTAGCAAGGACATGAGTACTCCATTAGGTAGATGGCTTGACTATGATATTGAAGTTTCTGAAAATGGCTTAGAACTTGAGTTTGACATAGTAACATATTTGATAGATGAATTGGTTTGTGATTTGTGGCTTGTTTAA 2415 0.3607 MKKRHSKGSFLSFFDWNDKSQKKRFCHIPKLPDVSNQAKENMKIMPMPQIKIDENGENTTNIASSDFNFALSINSDEECGTNKSLGLVARLMGLDSLPEVPTVSLEYSQFHEINHHSMAHYCNVDSTNTTLKSNKSFSRAIESSTTMNKCQNETLHPRSAKSISVTCNKLVSPIKCHGYMQSKNASSYIKGEDDKIIEASRRSYMRNRMSSVGSLSVPLRTLDLQEKLKGAPHGSKFSVNGKPSARSSKLYKSSPTTIGSRDSENNNSRRGKGKSGLLVTSSKTNVQSRDTLNLNGNRRYMKQINCHGENSNVLRQNGVTNKGKLTSKVDTIKATQTHSSGSSTRARNATNKCAVNSNIESKRSSTRVTDKQKDFSVSKRKSSSQKKRYDQNDARCSDNTVNTYERRSIKCNVTIDESPYQDTFSMEESKDVISFTFTSPLRKKMSKSRKIKVYPEKLSSSPTRLNVIDVDELSLMLSHINPPQCTLETEGCSVGFKSISEDRFDSMVCNSSREHDNSFHLNLLSDKLDIMDGNFCSSSDNMMLNMNQQFQMSQPTEDSRCSSNSESGNGSCYQHTRTLTTFENHFISKTYLDCKDSTHGGSAVYSSMQDEEILSSQINESISANYKKNWSEKSSTISSRMMELDYVKDILSNAELIEEELVLGETNNIIMPTLFDLLENKKTGVEIYEEYSKLERKAIFDCVRECLELRCRQVFTTRCKAWPRWVESVTMRKMWLAEEVYKDMLEFRSMEEEVVMDEIISKDMSTPLGRWLDYDIEVSENGLELEFDIVTYLIDELVCDLWLV 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04223 804 Pfam Domain of unknown function (DUF4378) 643 796 IPR025486 -
Trre1g04223 804 MobiDBLite consensus disorder prediction 334 395 - -
Trre1g04223 804 MobiDBLite consensus disorder prediction 334 363 - -
Trre1g04223 804 MobiDBLite consensus disorder prediction 231 294 - -
Trre1g04223 804 MobiDBLite consensus disorder prediction 364 394 - -
Trre1g04223 804 MobiDBLite consensus disorder prediction 240 294 - -
Trre1g04223 804 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 2 800 - -
Trre1g04223 804 Pfam DUF761-associated sequence motif 86 99 IPR032795 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04223 Trre-Chr1 47662659 47666039 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04223 1 801 TRM (TON1 Recruiting Motif) Superfamily AT3G58650 28.402 4.94e-59 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04223 - - tpra:123891334 1202.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04223 1 47662659 47666039 Trre1g04223 1 47662659 47666039 ECH