Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04222 ATGATAATGAAGAAAAGACATTCCAAGGGAAGTTTCCTTAGCTTCTTTGATTGGAATGACAAATCTCAAAAGAAGCGATTTTGTCACATTCCTAAGTTACCTGATGTTTCAAATCAAGCAAAGGAAAACATGAAAATCATGCCAATGCCACAGATAAAGATAGATGAGAATGGAGAAAATACTACTAATATTGCAAGTAGTGATTTTAACTTTGCCTTATCAATTAATAGTGATGAAGAATGTGGGACTAATAAATCCCTAGGGCTAGTAGCCAGACTCATGGGTTTGGATTCACTTCCTGAAGTTCCAACTGTTTCTCTTGAATATTCTCAGTTTCATGAGATTAATCATCATTCGATGGCTCACTATTGCAATGTAGATTCCACAAACACAACACTTAAGTCGAACAAGTCTTTTTCGCGTGCCATTGAATCATCGACGACAATGAATAAATGTCAAAATGAAACTTTGCATCCAAGGTCTGCTAAATCTATTTCAGTTACTTGCAATAAACTTGTGTCTCCTATCAAATGTCATGGTTATATGCAATCTAAGAATGCATCATCATATATAAAGGGGGAAGATGATAAGATCATTGAGGCAAGTCGCCGATCATATATGAGGAACAGAATGTCTTCAGTTGGTTCTTTATCTGTTCCCTTGAGGACTCTTGATTTGCAAGAGAAATTGAAAGGGGCGCCGCACGGATCAAAGTTCAGTGTGAATGGAAAACCTAGTGCTAGGAGCAGCAAGTTATATAAGTCTAGTCCAACCACCATCGGTTCAAGAGATTCAGAAAATAATAATTCACGCCGAGGTAAAGGAAAATCTGGTTTGCTTGTAACATCGTCCAAAACCAATGTTCAAAGTAGGGATACGTTGAATTTGAATGGAAATAGGAGATACATGAAGCAGATAAATTGTCATGGCGAAAACAGCAATGTTCTTAGGCAGAATGGTGTGACCAACAAAGGTAAATTAACTTCAAAAGTGGACACTATTAAGGCAACACAAACCCATTCGTCAGGAAGTTCTACTCGAGCTAGGAACGCAACAAATAAATGTGCTGTTAATTCCAACATTGAATCCAAAAGGTCAAGCACAAGAGTAACTGATAAGCAAAAGGATTTTTCGGTATCAAAAAGAAAGAGTTCTTCCCAAAAGAAGAGGTATGATCAAAATGACGCACGATGTTCTGATAACACAGTTAATACTTATGAAAGAAGGTCCATAAAGTGTAATGTTACAATTGATGAAAGTCCTTACCAGGATACATTTAGCATGGAAGAAAGCAAGGATGTCATTTCATTTACATTTACATCTCCATTAAGGAAAAAAATGTCTAAGTCGCGAAAAATTAAGGTTTATCCTGAAAAATTATCATCATCTCCTACCAGGTTAAATGTAATAGATGTTGATGAATTAAGTCTCATGTTATCTCACATTAATCCACCTCAATGTACCTTGGAAACAGAAGGGTGTTCTGTTGGTTTTAAATCTATTTCGGAAGACAGATTTGACAGCATGGTATGCAACTCATCAAGGGAACATGACAATAGCTTTCACCTGAACCTGCTTAGTGATAAATTGGACATCATGGATGGCAATTTTTGTTCTTCAAGTGATAATATGATGCTTAACATGAATCAGCAATTTCAGATGTCACAACCAACCGAAGATTCGAGGTGTAGCAGCAATAGTGAAAGTGGAAATGGTTCATGTTATCAGCATACAAGAACTCTTACTACATTTGAAAATCATTTCATCAGTAAAACTTACTTGGATTGTAAAGATAGCACACATGGAGGCAGCGCCGTTTATTCTTCCATGCAAGATGAAGAAATACTTAGTTCTCAAATAAATGAATCTATATCAGCTAACTACAAGAAGAATTGGTCTGAGAAAAGCTCTACAATATCATCAAGGATGATGGAACTTGACTATGTAAAGGATATACTTAGCAATGCAGAATTGATAGAAGAAGAATTAGTATTGGGTGAGACAAACAATATAATAATGCCAACTCTCTTTGACCTTCTGGAGAATAAAAAAACAGGTGTAGAAATCTATGAAGAGTACTCTAAGCTTGAAAGGAAAGCTATATTTGATTGTGTAAGAGAGTGCTTAGAATTAAGATGTAGACAAGTTTTTACTACAAGGTGCAAAGCATGGCCTAGATGGGTGGAATCAGTTACTATGAGGAAGATGTGGTTAGCAGAAGAAGTGTATAAGGATATGTTGGAGTTTAGAAGCATGGAAGAAGAGGTAGTGATGGATGAGATTATTAGCAAGGACATGAGTACTCCATTAGGTAGATGGCTTGACTATGATATTGAAGTTTCTGAAAATGGCTTAGAACTTGAGTTTGACATAGTAACATATTTGATAGATGAATTGGTTTGTGATTTGTGGCTTGTTTAA 2421 0.3602 MIMKKRHSKGSFLSFFDWNDKSQKKRFCHIPKLPDVSNQAKENMKIMPMPQIKIDENGENTTNIASSDFNFALSINSDEECGTNKSLGLVARLMGLDSLPEVPTVSLEYSQFHEINHHSMAHYCNVDSTNTTLKSNKSFSRAIESSTTMNKCQNETLHPRSAKSISVTCNKLVSPIKCHGYMQSKNASSYIKGEDDKIIEASRRSYMRNRMSSVGSLSVPLRTLDLQEKLKGAPHGSKFSVNGKPSARSSKLYKSSPTTIGSRDSENNNSRRGKGKSGLLVTSSKTNVQSRDTLNLNGNRRYMKQINCHGENSNVLRQNGVTNKGKLTSKVDTIKATQTHSSGSSTRARNATNKCAVNSNIESKRSSTRVTDKQKDFSVSKRKSSSQKKRYDQNDARCSDNTVNTYERRSIKCNVTIDESPYQDTFSMEESKDVISFTFTSPLRKKMSKSRKIKVYPEKLSSSPTRLNVIDVDELSLMLSHINPPQCTLETEGCSVGFKSISEDRFDSMVCNSSREHDNSFHLNLLSDKLDIMDGNFCSSSDNMMLNMNQQFQMSQPTEDSRCSSNSESGNGSCYQHTRTLTTFENHFISKTYLDCKDSTHGGSAVYSSMQDEEILSSQINESISANYKKNWSEKSSTISSRMMELDYVKDILSNAELIEEELVLGETNNIIMPTLFDLLENKKTGVEIYEEYSKLERKAIFDCVRECLELRCRQVFTTRCKAWPRWVESVTMRKMWLAEEVYKDMLEFRSMEEEVVMDEIISKDMSTPLGRWLDYDIEVSENGLELEFDIVTYLIDELVCDLWLV 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04222 806 Pfam DUF761-associated sequence motif 88 101 IPR032795 -
Trre1g04222 806 MobiDBLite consensus disorder prediction 336 397 - -
Trre1g04222 806 MobiDBLite consensus disorder prediction 336 365 - -
Trre1g04222 806 Pfam Domain of unknown function (DUF4378) 645 798 IPR025486 -
Trre1g04222 806 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 3 802 - -
Trre1g04222 806 MobiDBLite consensus disorder prediction 233 296 - -
Trre1g04222 806 MobiDBLite consensus disorder prediction 366 396 - -
Trre1g04222 806 MobiDBLite consensus disorder prediction 242 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04222 Trre-Chr1 47662653 47666039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04222 2 803 TRM (TON1 Recruiting Motif) Superfamily AT3G58650 28.369 1.94e-59 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04222 - - tpra:123891334 1206.43