LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g04221	ATGGAAATGGGAAGCAGTAGCAGGAGAAAGAACAACAACAAGAAACAGCAACACGATTTGGAGTTAGAAAAAGTTCGCTTAATCAGTTTAGCTCTTGAATTCGGCTACGATGAACACTCCGCAAACCAATGTTTCGATCGTCTTGTCGCTCTCTACGGTGATGATGGTCGTGATTTTATCACCGTTGAACATTGTGGCGATGATTTTCTTGTTGCTTTGGCGGAATCAGTGCAAGACACGGAGGAATGGGATGATCTACGCGAAATGGAATCACAAGCTGTTGGAACTTTGAATCACGTGCTTGATGAAGGTCTTGCCACTTGCGCTGATGCTTCTAGAAACTTCGTTGATATTGTTGACGATTCTCCTCAGAAAAGTCCGACCAAATTTGTTGAGTTGAGTTCAAGTGACGATGAAGATACGGATTTTAATGTTTCCAGGGTTCAACATCCTCCAAACTCCGCGGATTGCAGAAGTGGCATCACTCCGGGCTCAGTTTCATCAACTTTCAGGAAAAAACAGCCCTCCTTTGCTTCAAAGGAAAAAAATAGTACTCTCACTTATGAAGAATTGAAAGCGCTAGATGATATTGAATTGGCAAATGTCGTTATCTTCGGTAATAAGACATTTCGACCATTGCAGCATCAAGCATGTAAATCAGCTTTGGCAAAACAAGATTCTTTTATTCTTATGCCTACAGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACCCTTCAACCAGGAGTTACAATAGTTGTATCTCCTCTACTTTCACTTATTCAGGATCAGATAATAACACTTAACTTGAAGTTTGGAATTCCTGCTACATTTTTAAATTCTCAACAAACTGCTTCACAAGCTGCAGCTGTTCTCCAAGAGCTAAGAAAAGACAAGCCTTCGTGCAAGCTCTTGTATGTGACACCTGAGAGAATTGCTGGAAACCAATCATTTATTGGGATTCTAAAATGCATGCATCAGAAGGGACAACTAGCAGGTTTTGTTGTTGATGAGGCACACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGTGGATTAGGATCCCTTAAGCAACATTTTCCATACGTACCTGTCATGGCATTGACTGCCACTGCAACTCACCCAGTCCGCGAGGACATCTTAAATGCTTTAAGAATTCCACATGCAATTGTTCTTGAAAGAAGTTTTGACAGACCGAATTTGAAGTATGAAGTGATTGCTAAGACAAAGGAACCGCTGAAGCAGCTTGGACAACTATTAATGGATCGTTTCAAGAGTCAGTGTGGCATTGTATACTGCCTCTCAAAAAGTGAATGTGTTGAGGTATCAAAATTCTTGAATGAGAAATGTAAAATTAAGGCAGCATATTACCATGCTGGCTTGGCTGTCCGGCAGAGAGTTTCTGTTCAAAAGAAATGGCATGATGGAGAGGTCCATATTGTATGTGCAACTATTGCTTTTGGGATGGGGATAGACAAGCCTGATGTTCGATTTGTCATCCACAATACAATGTCAAAATCAATCGAAAGCTATTATCAAGAATCAGGAAGGGCTGGAAGAGATAATCTTCCCGCTGTATGCATTGCTCTATACCAGAAGAAAGATTTTAGTAGAGTAGTATGCATGATAAGAAACGGCCAAGTATATAAAAAGGACAGTTTTAAGACAGCAATGGCTCAAGCCAAAATGATGCAACAGTACTGTGAATTAAAGGATGAATGCCGGAGACAAACCTTACTCAAACACTTCGGAGAATCTTTCAATAGAAAGTCTTGCAAGAATGGCTCCAGCCCTTGTGATAATTGTCTTAAGACTGCATCGTGA	1836	0.4101	MEMGSSSRRKNNNKKQQHDLELEKVRLISLALEFGYDEHSANQCFDRLVALYGDDGRDFITVEHCGDDFLVALAESVQDTEEWDDLREMESQAVGTLNHVLDEGLATCADASRNFVDIVDDSPQKSPTKFVELSSSDDEDTDFNVSRVQHPPNSADCRSGITPGSVSSTFRKKQPSFASKEKNSTLTYEELKALDDIELANVVIFGNKTFRPLQHQACKSALAKQDSFILMPTGGGKSLCYQLPATLQPGVTIVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTASQAAAVLQELRKDKPSCKLLYVTPERIAGNQSFIGILKCMHQKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQHFPYVPVMALTATATHPVREDILNALRIPHAIVLERSFDRPNLKYEVIAKTKEPLKQLGQLLMDRFKSQCGIVYCLSKSECVEVSKFLNEKCKIKAAYYHAGLAVRQRVSVQKKWHDGEVHIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCMIRNGQVYKKDSFKTAMAQAKMMQQYCELKDECRRQTLLKHFGESFNRKSCKNGSSPCDNCLKTAS	611

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g04221	611	Gene3D	-	169	401	IPR027417	-
	Trre1g04221	611	ProSitePatterns	DEAH-box subfamily ATP-dependent helicases signature.	333	342	IPR002464	-
	Trre1g04221	611	FunFam	ATP-dependent DNA helicase	402	609	-	-
	Trre1g04221	611	Pfam	Helicase conserved C-terminal domain	419	525	IPR001650	-
	Trre1g04221	611	CDD	DEXHc_RecQ	204	401	-	-
	Trre1g04221	611	Gene3D	-	402	610	IPR027417	-
	Trre1g04221	611	PANTHER	DNA HELICASE RECQ FAMILY MEMBER	195	607	-	-
	Trre1g04221	611	CDD	SF2_C_RecQ	402	535	-	-
	Trre1g04221	611	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	416	568	IPR001650	-
	Trre1g04221	611	NCBIfam	RecQ family ATP-dependent DNA helicase	204	609	IPR004589	GO:0004386\|GO:0006310
	Trre1g04221	611	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	249	547	IPR027417	-
	Trre1g04221	611	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	218	394	IPR014001	-
	Trre1g04221	611	FunFam	ATP-dependent DNA helicase	191	401	-	-
	Trre1g04221	611	Pfam	DEAD/DEAH box helicase	212	380	IPR011545	GO:0003676\|GO:0005524
	Trre1g04221	611	MobiDBLite	consensus disorder prediction	123	142	-	-
	Trre1g04221	611	Pfam	RecQ zinc-binding	538	607	IPR032284	-
	Trre1g04221	611	SMART	helicmild6	444	526	IPR001650	-
	Trre1g04221	611	SMART	ultradead3	206	410	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g04221	Trre-Chr1	47655937	47660995	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g04221	424	524	Eukaryotic Initiation Factors Gene Family	AT5G11170	31.683	1.20e-08	55.5

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre1g04221	1	47655937	47660995	Trre1g04221	1	47655937	47660995	ECH