Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04217 ATGTCGTATCGCCCAAACGCAAACTCAAGGACCGAGGTCCGTCGCAATCGATACAAAGTCGCCGTCGATGCCGAAGAAGGTCGCCGACGCCGTGAGGACACCATGGTTGAGATCCGTAAGAATCGTAGAGAAGAGAGTTTGTTGAAAAAAAGACGCGAAGGTCTTCAACCTCAGCAGATTCCTTCTTCTCTTCACTCTACCGTCGTTGAGAAGAAGTTGGAAAATTTACCATCTATGGTTGCTAGTGCTTGGAGTGATGATAATACCTTGCAGCTTGAGGCAACAACTCAGTTTCGAAAGCTTCTTTCTATTGAACGTACTCCACCGATTGAGGAGGTTATACAGACTGGTGTAGTTTCTCGTTTTGTTGAGTTTCTGATGAGGGAGGATTTTCCACAGTTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCCGGAACCTCTGAAAACACTAAGGTGGTAATTGACCATGGGGCTGTCCCAATTTTTGTGAAGCTCCTTGCTTCTTCTAGTGATGATGTCCGCGAACAGGCAGTGTGGGCTTTAGGAAATGTTGCTGGGGATTCTCCCAAATGCCGTGATCTTGTTCTTGGTCATGGAGCCTTGGTTCCTCTTTTGGCACAATTGAATGAACATGCCAAGCTTTCTATGCTGAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAACCTGCGCTTCCTGCTCTTGTTGGTCTTATTCATTCAAATGATGAAGAAGTCTTAACTGATGCCTGCTGGGCACTTTCATATCTTTCTGATGGTACAAATGATAAAATTCAAGCTGTAATTGAAGCTGGTGTTTGTCCTCGACTGGTTGAGCTTCTACTGCACCCATCTCCTTCAGTGCTAATTCCTGCTCTACGTACTGTTGGAAACATTGTCACTGGAGATGATACGCAAACTCAGGTCATCATCAATCATCAGTCTCTTCCTTGCCTATTTAATCTGCTGACCAATAATTATAAAAAAAGCATCAAGAAGGAAGCTTGTTGGACCATATCAAACATTACAGCTGGGAATAAACAACAGATTCAGGCTGTGATTGAGGCCAATATATTTGGTCCTTTGGTGAACCTGCTTCAAAATGCTGAATTTGATATTAAGAAAGAGGCTGCTTGGGCTATCTCAAATGCTACATCTGGTGGATCTCACGAACAAATCAAGTACCTAGTAAGTCAGGGGTGTATTAAGCCCTTGTGTGATCTTCTTATCTGTCCCGATCCTAGGATTGTGACAGTTTGTCTGGAAGGCCTTGAAAACATCTTGAAGGTTGGAGAAGCTGATAAGAATATAGGCAATACTGGTGACGTGAACCTATATGCACAGATGATTGATGATGCTGAGGGTTTGGAGAAAATTGAGAACCTCCAGAGTCATGATAACACGGAGATTTATGAAAAGGCTGTGAAGATTCTTGAGACATACTGGTTGGAGGAAGAAGATGAGACTATGCCTCCAGGGGATGCCGCACAATCAGGATTCAACTTTGGTGGCGCAGAGGTTCCTTCTGTGCCGTCTGGAGGATTCAACTTCAATCAGTAG 1602 0.4426 MSYRPNANSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLLKKRREGLQPQQIPSSLHSTVVEKKLENLPSMVASAWSDDNTLQLEATTQFRKLLSIERTPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASSSDDVREQAVWALGNVAGDSPKCRDLVLGHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALVGLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDTQTQVIINHQSLPCLFNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANIFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDAAQSGFNFGGAEVPSVPSGGFNFNQ 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04217 533 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Trre1g04217 533 FunFam Importin subunit alpha 74 497 - -
Trre1g04217 533 Gene3D - 13 52 IPR036975 GO:0006606
Trre1g04217 533 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Trre1g04217 533 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Trre1g04217 533 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Trre1g04217 533 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Trre1g04217 533 Pfam Armadillo/beta-catenin-like repeat 108 147 IPR000225 GO:0005515
Trre1g04217 533 Pfam Armadillo/beta-catenin-like repeat 320 358 IPR000225 GO:0005515
Trre1g04217 533 Pfam Armadillo/beta-catenin-like repeat 276 314 IPR000225 GO:0005515
Trre1g04217 533 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Trre1g04217 533 Pfam Atypical Arm repeat 458 504 IPR032413 -
Trre1g04217 533 SMART arm_5 275 315 IPR000225 GO:0005515
Trre1g04217 533 SMART arm_5 191 232 IPR000225 GO:0005515
Trre1g04217 533 SMART arm_5 234 273 IPR000225 GO:0005515
Trre1g04217 533 SMART arm_5 149 189 IPR000225 GO:0005515
Trre1g04217 533 SMART arm_5 106 147 IPR000225 GO:0005515
Trre1g04217 533 SMART arm_5 403 443 IPR000225 GO:0005515
Trre1g04217 533 SMART arm_5 360 400 IPR000225 GO:0005515
Trre1g04217 533 SMART arm_5 317 358 IPR000225 GO:0005515
Trre1g04217 533 SUPERFAMILY ARM repeat 14 501 IPR016024 -
Trre1g04217 533 PANTHER IMPORTIN ALPHA 14 502 - -
Trre1g04217 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Trre1g04217 533 Gene3D - 74 497 IPR011989 -
Trre1g04217 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Trre1g04217 533 FunFam Importin subunit alpha 13 52 - -
Trre1g04217 533 PIRSF Importin_alpha 5 531 IPR024931 GO:0005737|GO:0006606|GO:0061608
Trre1g04217 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Trre1g04217 533 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04217 Trre-Chr1 47598503 47602355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04217 153 422 U-box Gene Family AT1G23030 23.333 9.52e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04217 K15042 - gmx:100789135 994.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04217 1 47598503 47602355 Trre1g04217 1 47598503 47602355 ECH
Trre13g05010 13 56179601 56183563 Trre1g04217 1 47598503 47602355 ECH
Trre1g04217 1 47598503 47602355 Trre13g05010 13 56179601 56183563 ECH
Trre3g01636 3 13063678 13067018 Trre1g04217 1 47598503 47602355 ECH
Trre13g05010 13 56179601 56183563 Trre1g04217 1 47598503 47602355 PCT