Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04211 ATGGCGACAAGGAATCGCACTTTGCTTTTCCGAAAATACAGAGATGCATTGAAGAGTGTTCGTGCTCCGTCAGCATCTTCGCCATCGTCTAAATCTTCCGCCGGTGGTCCCGTCATTGAATTGGTCAGCACCTCGCTTCTCAATCAAAATCGCTCTTATGCTCCTCTTAGTACCGAAGATCCTGGAAATTCAAGTAAGGGTATAAATCCAATTACTGTGGGGCTACCTCCTGCGTGGGTGGATGTATCTGAAGAAATATCAGCGAATGTGCAACGTGCACGCACAAAAATGGCAGAGTTGTCCAAGGCTCATGCAAGGGCCTTAATGCCATCATTTGCAGATGGTAAGGATGACCAACATGCTATTGAGTCTCTAACACATGAGATAACTGACTTGATAAAGAGATCAGAGAAGAGACTGCGGAGACTTGCTGCTACAGGGCCTTCTGAGGATTCCAATGTCAGGAAAAATGTGCAGCGTTCTCTTGCTACTGACCTTCAGAGCCTCTCTGTAGAGCTTCGTAAAAAACAATCAACTTATTTGAAGCGCCTCAGACTGCAAAAAGAGGGTCAAGATGGGGTTGATCTAGAGATCAACATGAATGGAAGTAAATCTAGATATGAAGATGATGACTTGGACAATATGATATTTAACGAACATCAGATGGCCAAGCTAAAAAAAAGTGAAGCTTTCACAGTTGAAAGAGAAAAAGAGATACAACAGGTTGTAGAATCTGTGAACGAGCTTGCTCAGATTATGAAGGATTTATCAGTACTAGTCATAGACCAGGGAACCATTGTTGATAGAATAGATTACAACATTCAGAATGTGGCAACCACAGTTGAGGATGGCCTCAAACAGCTGCAGAAGGCAGAGAGAACTCAGAAAAAGGGGGGCATGGTAATGTGTGCGTCAGTGCTTCTTATCATGTGCTTTGTTATGTTGGTTCTCTTAGTAATTAAGGAAATTATTTTGTGA 978 0.4274 MATRNRTLLFRKYRDALKSVRAPSASSPSSKSSAGGPVIELVSTSLLNQNRSYAPLSTEDPGNSSKGINPITVGLPPAWVDVSEEISANVQRARTKMAELSKAHARALMPSFADGKDDQHAIESLTHEITDLIKRSEKRLRRLAATGPSEDSNVRKNVQRSLATDLQSLSVELRKKQSTYLKRLRLQKEGQDGVDLEINMNGSKSRYEDDDLDNMIFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCASVLLIMCFVMLVLLVIKEIIL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04211 325 Coils Coil 83 103 - -
Trre1g04211 325 FunFam Syntaxin-43 76 283 - -
Trre1g04211 325 Pfam SNARE domain 265 317 IPR000727 -
Trre1g04211 325 CDD SNARE_syntaxin16 234 290 - -
Trre1g04211 325 Gene3D - 76 283 - -
Trre1g04211 325 ProSitePatterns Syntaxin / epimorphin family signature. 235 274 IPR006012 GO:0005484|GO:0006886|GO:0016020
Trre1g04211 325 PANTHER SYNTAXIN 82 310 IPR045242 -
Trre1g04211 325 SMART SynN_4 70 185 IPR006011 GO:0016020
Trre1g04211 325 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 229 291 IPR000727 -
Trre1g04211 325 SMART tSNARE_6 224 291 IPR000727 -
Trre1g04211 325 SUPERFAMILY t-snare proteins 75 284 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04211 Trre-Chr1 47557964 47563372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04211 1 325 SNARE and Associated Proteins AT5G26980 77.064 0.0 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04211 K08489 - gmx:100796741 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04211 1 47557964 47563372 Trre1g04211 1 47557964 47563372 ECH
Trre13g04785 13 54536561 54542061 Trre1g04211 1 47557964 47563372 ECH