Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04209 ATGGCGTCAGAGCCATTCTCAATTGTATCGGTTGTTGAAGATGTTATTCAAAAACATGGAAGCGAATTCAATGACATTGATTTCGCTTCAAAAATTAGAAAATCTGAAGAAGCTTCATCAAGAAGGAATGAAGCAGCTAAGTGGTTGCGAAATACAGTTGGAGGAAAAGACTTGTTGGATGAACCTTCTGAAGAAGCTTTCAGAATTGCATTGCGTAGTGGCATTATCCTTTGCACTGCTCTCAACAAAGTTCAACCTGCTGCTGTACCCAATGTAGTTGAAGCCCCGAGTGACATTGACAATATTCCTGATGGGGCAGCACTATCTGTATATCAATACTTTGAAAATGTAAGGAATTTTCTAGTAACTATGGAAGAGATGGGGCTTCCAACATTTGATGCTTCTGATTTGGAGCAGGGAGGAAAATCTTCAAGGGTAGTGAATTGTGTTTTAGCACTTAAATCGTATAGTGAATGGAAACTAGAAGGCAAAAATGGATTGTGGAAATATGGTGGGAATCCAAAGCCACAACCTACCGTTGGGAAAACATTTGTGAGAAAAAACTCAATACCATTCATGAGGTCTTTGTCTAGAGGAGATGCTGTATCGTTGGGCGACAAAGATGGTTGCCCGAGTGAACACTCTTCAAGCATTGATGCTGTACTTAATGATTGCAGTGAAGAGGGTTCTATTCCTTCCTTGTATTCACTAGTTCGTGAAATTTTGCATGATAAGAAGCAAGAAGACATTCCATTTATAGTAGAATCTTTGCTTAGCAAAGTCATGGAAGAGTTTGAAAGTCGTGCGATCACAGTACAACAAGAAATGATGGATGAAAATGAAGATGTGAAGTACCATGACGATGAAAAGTCAAGTATAACACTTTTGAAGCAGCAAAACATAATTCAAAGGCAACATGAAAACATTCAGGAATTGAAAATGATTGTTAATCAAACAAAAGCAGGAATGCACTGTCTACATGAGAAATACAGGGAGGATTTCATTTGTCTAGGTAGTCATCTGCATAGCCTAGCCACTTCTGCTTCAAGATATCAGAAAGTTCTAGAAGAAAACCGCAAGTTATACAATCAGATGCAGGACTTGAAAGGTAATATTAGAGTGTACTGTAGAGTTCGCCCCTTAATAGGACAAAACAAATGTGGTATTGTCTGTAGTGTAGAGGAAGAAAGTATTTCAATCATAACGCCTTCTAAGAATGGAAAGGAGGTGAAGAAGACATTTACTTTTAACAAAGTGTTTGGTCCTTCTGCAACTCAAGGGGAGGTTTTCTCAGATACACAACCTCTGATTCGTTCGGTTTTGGATGGATTCAATGTTTGTATATTTGCCTACGGCCAGACAGGGTCAGGAAAAACACACACTATGTCTGGACCAAACAATATTACTGAGGAAACAGTTGGTGTCAACTACCGTGCTTTGAGTGATCTTTTCTGTCTCTTAGAACAAAGGAAAGACACCATTCACTATGATATCTCTGTCCAGATGCTTGAGATATACAATGAGCAAAATCGAGCAGTTGGTTCTACTGCCATGAATGATCGGAGTAGTCGTTCTCATAGCTGCTTGACAGTTCATGTTCAAGGAAGAGAGCTTTCATCAGGAAATAGTCTTCGTGGATGTATCCACCTAGTTGATTTGGCAGGAAGTGAGAGGGTTGATAAATCTGAGGTGACAGGAGATAGGCTAAAGGAGGCTCAACATATTAACAAGTCGCTCTCCGCTTTAGGAGATGTAATTTCTTCCCTCGCCCAAAAGCAATCACATGTTCCTTACCGAAACAGTAAACTTACTCAATTGCTTCAGGACTCTCTTGGAGGCCAAGCAAAGACACTCATGTTTGTTCATATTAGCCCGGAGCCTGAAGCTCTTGGAGAAACAATTAGTACACTGAAGTTTGCTGAAAGAGTCTCAACTATTGAACTTGGTGCAGCACGAGCTAATAAAGAGAGCGGCGAAGTGAAAGAGCTGAAGGAACAGATTGCTAGTCTAAAGGCAACCATAGCGAGGATGAAGGGTGCAGAGTTGGAACACTTTAAACAGCCTTCAAATAGAGTTACCGGAGGGCGTAAGCTACCAAGAGATTATTCTAGTAGCACTGAGGACCCGAAAAAAGCTTCATCAAAACCAAAAAGTCAAAGCCTTGATCCCAGAGACATATATTGGCGTTCACCTACATGGCCACATCCACATGCTGGGGTAAATGGAAATGAGGATGATAAGGAATCGATTTCTTGTGGAAGCATGTATAGGGATGATAGCTTAACAACTGATGATAACTTCTCAGGACAGTGGGACACAGAAAGCAAACAATCGTCTTCTCCATTGTGGATGGCCACCACATCCACAATTGATTCTGATGAGTTTGAGTTCGCAACTAGTGTATGTTCAGAACCAGACATGAGTTGGCAATCCCATTCACCAAAAACAACCGCCATTTCCAGTTTATCAGTGTCTAGACCAAAGAGATCAGTTCATCTCAGACATGGGAAGAACTTAGAAACCAGGAGTACGATCCCATCGATGCTTCCTTTATCACCAAGAAAACATCCCACCTCAGCTAGCCAACCAAGAAAGCATTCATCAGGTTCAATTGATGCTAAAAGAAGAAGTGGAAATGCCAAATGA 2646 0.4078 MASEPFSIVSVVEDVIQKHGSEFNDIDFASKIRKSEEASSRRNEAAKWLRNTVGGKDLLDEPSEEAFRIALRSGIILCTALNKVQPAAVPNVVEAPSDIDNIPDGAALSVYQYFENVRNFLVTMEEMGLPTFDASDLEQGGKSSRVVNCVLALKSYSEWKLEGKNGLWKYGGNPKPQPTVGKTFVRKNSIPFMRSLSRGDAVSLGDKDGCPSEHSSSIDAVLNDCSEEGSIPSLYSLVREILHDKKQEDIPFIVESLLSKVMEEFESRAITVQQEMMDENEDVKYHDDEKSSITLLKQQNIIQRQHENIQELKMIVNQTKAGMHCLHEKYREDFICLGSHLHSLATSASRYQKVLEENRKLYNQMQDLKGNIRVYCRVRPLIGQNKCGIVCSVEEESISIITPSKNGKEVKKTFTFNKVFGPSATQGEVFSDTQPLIRSVLDGFNVCIFAYGQTGSGKTHTMSGPNNITEETVGVNYRALSDLFCLLEQRKDTIHYDISVQMLEIYNEQNRAVGSTAMNDRSSRSHSCLTVHVQGRELSSGNSLRGCIHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVISSLAQKQSHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPEALGETISTLKFAERVSTIELGAARANKESGEVKELKEQIASLKATIARMKGAELEHFKQPSNRVTGGRKLPRDYSSSTEDPKKASSKPKSQSLDPRDIYWRSPTWPHPHAGVNGNEDDKESISCGSMYRDDSLTTDDNFSGQWDTESKQSSSPLWMATTSTIDSDEFEFATSVCSEPDMSWQSHSPKTTAISSLSVSRPKRSVHLRHGKNLETRSTIPSMLPLSPRKHPTSASQPRKHSSGSIDAKRRSGNAK 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04209 881 PRINTS Kinesin heavy chain signature 547 565 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g04209 881 PRINTS Kinesin heavy chain signature 443 464 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g04209 881 PRINTS Kinesin heavy chain signature 596 617 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g04209 881 PRINTS Kinesin heavy chain signature 516 533 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g04209 881 Coils Coil 351 371 - -
Trre1g04209 881 SMART kinesin_4 369 654 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g04209 881 MobiDBLite consensus disorder prediction 755 782 - -
Trre1g04209 881 Coils Coil 653 680 - -
Trre1g04209 881 MobiDBLite consensus disorder prediction 840 867 - -
Trre1g04209 881 ProSiteProfiles Calponin homology (CH) domain profile. 39 158 IPR001715 GO:0005515
Trre1g04209 881 Pfam Calponin homology (CH) domain 40 158 IPR001715 GO:0005515
Trre1g04209 881 MobiDBLite consensus disorder prediction 701 718 - -
Trre1g04209 881 PANTHER KINESIN-LIKE PROTEIN KLP-3 46 509 IPR027640 GO:0003777|GO:0007018
Trre1g04209 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 678 IPR027417 -
Trre1g04209 881 Coils Coil 262 282 - -
Trre1g04209 881 MobiDBLite consensus disorder prediction 804 881 - -
Trre1g04209 881 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein with CH (Calponin Homology) domain 582 665 - -
Trre1g04209 881 Gene3D - 34 170 IPR036872 -
Trre1g04209 881 MobiDBLite consensus disorder prediction 804 827 - -
Trre1g04209 881 SUPERFAMILY Calponin-homology domain, CH-domain 36 171 IPR036872 -
Trre1g04209 881 Gene3D Kinesin motor domain 510 685 IPR036961 -
Trre1g04209 881 Gene3D Kinesin motor domain 314 509 IPR036961 -
Trre1g04209 881 Pfam Kinesin motor domain 509 646 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g04209 881 CDD CH_AtKIN14-like 41 155 - -
Trre1g04209 881 ProSiteProfiles Kinesin motor domain profile. 371 646 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g04209 881 MobiDBLite consensus disorder prediction 681 782 - -
Trre1g04209 881 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein with CH (Calponin Homology) domain 313 522 - -
Trre1g04209 881 SMART ch_5 41 156 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04209 Trre-Chr1 47542979 47548781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04209 359 681 Calmodulin-binding Proteins AT5G65930 38.196 1.65e-64 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04209 K10406 - gmx:100816952 981.859