Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04179 ATGTCGACTGAGCCGTTGCTTCAACCGTCCGATACAGCTTCAGCGTTCCGGCAATGCGGCGGCGAACCGGCAAGGATTTTCGAGGAATTGCCGAAAGCAAGTATCGTTTCCGTTTCGCGACCAGAGACCGGTGAAATAAGTCCAATTCTACTTTCTTATACGATTGAATTGCAGTATAAACAGTTCAAATGGCGTCTAAGGAAGAAAGCATCACAAGTTCTCTATTTACAGTTTGCTTTGCGGAAACGTGCAATAATTGAAGAATTTCATGACAAGCAAGGACAGGTAAAAGAATGGCTTTATAGCTTAGGAATAGTAGATCAAACGGTAATGATGCAAGATGATGAAGAACCTGATGATGGATCTGTACCTACACATCATGAAGACAGTGTCAATAACAGATATGTCCCATCTGTTGCTGCTCTATCGATAATTCGTCCATCACTAGGAGGTCAGCAGTCAGTTGCAGATAGAGCCAAAATTGCAATGCAAAATTATTTGGATCTTTTTTTAGGAAATCTAGAGATTGTGAATTCTAGAGAGGTCTGCAAGTTTTTGGAGGTCTCCAAGCTGTCTTTTTTACAAGAGTATGGTCCAAAGCTGAGAGAAGGATATGTAACGGTGAAGCATTTGTCAAATATTTCACTGGATTCAGATGTAACATGCTTTCCATGTCATTGGTTTCACTTTTGTGATAACAATTGGAAGAAGGTATGGGCAGTTTTGAAGCCTGGATTTTTGGCCTTGCTGGAAGATCCCTTCAACAACAAGCCACTGGATATAGTTATGTTTGATGTCCTTCCATCCTCAACTGGCAAGGGAGAGACCAAAATCTATTTAGCTGAACCTGTAAAGGAACGCAATCCCTTGCGTTACACATTTAAGGTTACTGGTGGAAACAGGAGCATTTGCTTGAGAACTATCAGCAGTGCTAAAGTTAAAACTTGGGTTACTGCAATTAATGAAGCTGGTCTAAGACCTATGGAAGGGTGGTGTTCTCCTCATCGCTTTGGTTCATTTGCTCCTGTAAGAGGTTTGACTGTAGATGGAAGCCAAGCCCAATGGTACGTAGATGGAAAAGCTGCATTTGAAGCAATTGCTTCTTCAATTCAAGATGCAAAATCAGAGATCTTCATAACAGGTTGGTGGCTGTGTCCAGAGTTGTACATGAGACGGCCTTTCGATAGTTTTCCTACCTTTAGGTTAGACTCATTACTGGAAGAAAAAGCTAAACAAGGGGTTCAGATCTATGTGCTTCTCTACAAGGAGGTTTCTATAGCTTTGAAAATCAACAGTTTGTACAGTATGAGAAGACTTCTCAAAATTCATGAGAATGTGAGGGTATTACGCTATCCCGACCATTTTGCTTCTCGTGTGTATTTATGGTCGCACCATGAAAAACTTGTAATTGTTGATTACAAGGTTTGCTTTCTTGGAGGATTAGATTTATGCTTTGGACGATATGACACACCTGAGCATCAAGTGGGTGATTGTCCCTCTGTAATATGGCCAGGAAAGGACTATTACAATCCAAGAGAATCTGAACCAAATTCATGGGAAGACACCATGAAAGACGAATTGGATCGCCACAAATATCCCCGTATGCCATGGCATGATGTCCATTGTGCTCTTTGGGGACCTGCATGTCGTGACATTGCTCGGCACTTTGTTCAACGTTGGAATCATGCTAAGAGAACTAAAGCTCCAAATGAACATGAAATTCCTCTACTTATGCCTCACCATCACATGGTCATCCCACATTACATGGGAAGAAGCAAAGAGATTGACATTGATAATAAGAAGGATGAAGATGACAAGAAAGAAATTGAAAGGCAGGATTCGTTCTCCTCACAATCTCCATTGCAAGATATACCACTACTTTTGCCTCAAGAAGCTGACGGAGCAGTTACTTCGAGTGATGATGATAGAAATTCCAGCGAAAGTTCTCCATTACTGTCCCAAAATCTGGACAGTGAAACTTTAGTTTCAGTTAACCAGAAGAAAGGGCTTCAAGATGAAGCTGTTGCTTTTAACTTGGAGGATAAGGATAAATGCATTGTTGATGCTGTAGATGATTGGTGGGAAACACCAGAAGGTACTAATGAAGCCACTTCTTTGGAATATGGACAAGTTGGTCCACGTACTACTTGTCACTGTCAGATAATCAGAAGTGTAAGCCAGTGGTCTGTTGGAACAAGTCAACCTGAAGAAAGTATTCACACTGCTTATTGTTCTCTTATTGAAAAGGCAAAGCATTTTATCTACGTAGAGAACCAATTTTTCATATCAGGTCTAGCAAAGGATGACACAATACAAAACCGTATTTTGGAAGCAATATACAGGCGTATTTTGCAAGCCCACAAAGAACAGGAAGATTTTAGAGTTATAATTGTATTGCCCCTCTTGCCTGGCTTCCAGGGTGGTCTGGATGATGTTGGTGCTGCAACTGTGAGAGCCTTAACACATTGGCAGTATAGAACAATTTCTAGAGAAAGGCACTCCATATTACACAATCTGGAAGCTATACTTGGTCGTAAGACACATGATTATATTTCTTTTTATGGTCTAAGATCTCATGGTAGACTTTACCCAGATGGTCCTATGGCAACTTGTCAGGTATATGTACACAGTAAGTTGATGATAATTGATGACCGTGTAGCTTTGATAGGATCGTCTAATATAAATGACCGGAGTTTGCTTGGATCAAGAGACTCTGAGATCGGAGTGGTTATAGAAGACAAAGAATATGTTGAATCACTGATGAACGGAAAGCCATGGAAGGCTGGTAAATTTTCCCATAGCCTCCGCTGTTCCCTATGGTCTGAGCATCTTGGTCTTCATACCGGTGAGATTAATAAAATTACTGATCCAGTGGCTGATTCAACTTACAAGGATTTGTGGTTAGCTACTGCAAAGGAAAATACTAGAATCTACCATGAAGTCTTTGCTTGCATTCCCAATGATCAAATACACTCAAGAGCTGCACTTCGGCAAAGCATGGTACACTGGAAGGAAAAACTTGGCCAAACCATCATAGATTTAGGAATAGCCCCTGAGAAAGTAATCTGTCATGAGAATGGAGCAACAAAAGTAATAGACCCAATAGATAGATTGAAGTGTATAAAGGGACATCTTGTTTCCTTTCCTTTGGATTTCATGCGTGAGGAAGATTTAAGACCAGCTGTTATTGAGAGTGAATTTTATGTATCTCCTCAAGTATATCATTAA 3228 0.4058 MSTEPLLQPSDTASAFRQCGGEPARIFEELPKASIVSVSRPETGEISPILLSYTIELQYKQFKWRLRKKASQVLYLQFALRKRAIIEEFHDKQGQVKEWLYSLGIVDQTVMMQDDEEPDDGSVPTHHEDSVNNRYVPSVAALSIIRPSLGGQQSVADRAKIAMQNYLDLFLGNLEIVNSREVCKFLEVSKLSFLQEYGPKLREGYVTVKHLSNISLDSDVTCFPCHWFHFCDNNWKKVWAVLKPGFLALLEDPFNNKPLDIVMFDVLPSSTGKGETKIYLAEPVKERNPLRYTFKVTGGNRSICLRTISSAKVKTWVTAINEAGLRPMEGWCSPHRFGSFAPVRGLTVDGSQAQWYVDGKAAFEAIASSIQDAKSEIFITGWWLCPELYMRRPFDSFPTFRLDSLLEEKAKQGVQIYVLLYKEVSIALKINSLYSMRRLLKIHENVRVLRYPDHFASRVYLWSHHEKLVIVDYKVCFLGGLDLCFGRYDTPEHQVGDCPSVIWPGKDYYNPRESEPNSWEDTMKDELDRHKYPRMPWHDVHCALWGPACRDIARHFVQRWNHAKRTKAPNEHEIPLLMPHHHMVIPHYMGRSKEIDIDNKKDEDDKKEIERQDSFSSQSPLQDIPLLLPQEADGAVTSSDDDRNSSESSPLLSQNLDSETLVSVNQKKGLQDEAVAFNLEDKDKCIVDAVDDWWETPEGTNEATSLEYGQVGPRTTCHCQIIRSVSQWSVGTSQPEESIHTAYCSLIEKAKHFIYVENQFFISGLAKDDTIQNRILEAIYRRILQAHKEQEDFRVIIVLPLLPGFQGGLDDVGAATVRALTHWQYRTISRERHSILHNLEAILGRKTHDYISFYGLRSHGRLYPDGPMATCQVYVHSKLMIIDDRVALIGSSNINDRSLLGSRDSEIGVVIEDKEYVESLMNGKPWKAGKFSHSLRCSLWSEHLGLHTGEINKITDPVADSTYKDLWLATAKENTRIYHEVFACIPNDQIHSRAALRQSMVHWKEKLGQTIIDLGIAPEKVICHENGATKVIDPIDRLKCIKGHLVSFPLDFMREEDLRPAVIESEFYVSPQVYH 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04179 1075 Pfam Phospholipase D Active site motif 460 487 IPR001736 GO:0003824
Trre1g04179 1075 SUPERFAMILY PH domain-like 232 323 - -
Trre1g04179 1075 SMART pld_4 460 487 IPR001736 GO:0003824
Trre1g04179 1075 SMART pld_4 871 898 IPR001736 GO:0003824
Trre1g04179 1075 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 871 898 IPR001736 GO:0003824
Trre1g04179 1075 FunFam Phospholipase 704 925 - -
Trre1g04179 1075 Gene3D Endonuclease Chain A 694 934 - -
Trre1g04179 1075 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 460 487 IPR001736 GO:0003824
Trre1g04179 1075 CDD PLDc_vPLD1_2_yPLD_like_2 731 915 - -
Trre1g04179 1075 MobiDBLite consensus disorder prediction 639 658 - -
Trre1g04179 1075 Gene3D - 201 326 IPR011993 -
Trre1g04179 1075 Gene3D Endonuclease Chain A 346 590 - -
Trre1g04179 1075 ProSiteProfiles PH domain profile. 199 325 IPR001849 -
Trre1g04179 1075 MobiDBLite consensus disorder prediction 591 613 - -
Trre1g04179 1075 CDD PLDc_vPLD1_2_yPLD_like_1 353 498 - -
Trre1g04179 1075 PIRSF PLD_euk 31 594 IPR016555 GO:0004630|GO:0006654|GO:0048017
Trre1g04179 1075 PIRSF PLD_euk 586 1075 IPR016555 GO:0004630|GO:0006654|GO:0048017
Trre1g04179 1075 SMART PH_update 200 327 IPR001849 -
Trre1g04179 1075 SUPERFAMILY Phospholipase D/nuclease 323 580 - -
Trre1g04179 1075 PANTHER PHOSPHOLIPASE D 157 1058 IPR015679 -
Trre1g04179 1075 MobiDBLite consensus disorder prediction 591 658 - -
Trre1g04179 1075 Pfam PLD-like domain 744 918 IPR025202 -
Trre1g04179 1075 CDD PH_PLD 177 323 - -
Trre1g04179 1075 SUPERFAMILY Phospholipase D/nuclease 710 921 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04179 Trre-Chr1 47130272 47140615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04179 25 1075 Phospholipase D Gene Family (Wang group) AT3G05630 66.698 0.0 1417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04179 K01115 - gmx:100796914 1854.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04179 1 47130272 47140615 Trre1g04179 1 47130272 47140615 ECH