Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04165 ATGAATAGTAATCAAGCTTATGATTTGCAAACCTTGCTTAGTGCTGTTTTAACTAATCATCAAACATGTTTAGATGGTTTTCATGAAGTTAATCCTTATCCAAAAATTAGCACTACTTTATCAAACCCTCTTTCTGATGGGACCAAACTTTATAGGATATCTCTTTCTTTTTTCGCTCAATATCGGGTTAATACCATCGTTGGAAGATTAACAGAAAAAGCAATTATAATGAATAATAGAAAATTGTTACAGACAAGTGTTGACAATGTGATTGTGAAACAAAAAGTGATTGTTAACCCTGATGGATCTGGAGATTTTGTGACAATAAATGAAGCTGTGGATGCTGCACCTAACAAAACAGGCACCAACAATGGCTACCATGTAATTTATGTTGTTGCTGGGATTTATAATGAGTATGTGTCTATTGCTAAGAGTAAAGAGAATCTAATGATTGTCGGAGATGGTATCGGTCGGACTGTGATTACCGGTAATCGTAGCGTGGTTGATGGTTGGACCACTTTCCAGTCTGCAACTTTTGCTGTAACTGGAAAAGGGTTTGTTGCTGTGAACATAACATTTCAAAACACCGCGGGATCAAGCAAGCATCAAGCAGTTGCGGTGAGAAACGGAGCTGACATGTCTGTTTTCTACAATTGTAGCTTCGAAGCACAAGGAAGAACAGATCCTAATCAAAACACTGGGTTCTCTATATGGAATTGTTACATTGTAGCAGCTAGTGATTTGGGAGGTGCAAATTATAATTATAATGGTATAAAGACATATTTGGGTAGGCCTTGGAAAGAGTATTCAAGAACAATTTACATGCAATGTTTTATTGATGGTTTGATTGATTCAAAGGGTTGGATTGAATGGTTAGGTGATTTTGCATTAAACACATTGTATTATGCTGAATTTGCTAATTGGGGACAAGGTTCAAATACTAGTAATAGGGTCACATGGAAAGGGTACCATCAAATTGATGGAAAAAATGCTGATGAATTCACAGTTTACAAATTTATTCAAGGTGACATGTGGTTGCCTAAGACAGGAGTGCCTTTTAGAGCTGGGTTATAG 1074 0.3659 MNSNQAYDLQTLLSAVLTNHQTCLDGFHEVNPYPKISTTLSNPLSDGTKLYRISLSFFAQYRVNTIVGRLTEKAIIMNNRKLLQTSVDNVIVKQKVIVNPDGSGDFVTINEAVDAAPNKTGTNNGYHVIYVVAGIYNEYVSIAKSKENLMIVGDGIGRTVITGNRSVVDGWTTFQSATFAVTGKGFVAVNITFQNTAGSSKHQAVAVRNGADMSVFYNCSFEAQGRTDPNQNTGFSIWNCYIVAASDLGGANYNYNGIKTYLGRPWKEYSRTIYMQCFIDGLIDSKGWIEWLGDFALNTLYYAEFANWGQGSNTSNRVTWKGYHQIDGKNADEFTVYKFIQGDMWLPKTGVPFRAGL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04165 357 PANTHER PECTINESTERASE 3 223 - -
Trre1g04165 357 Pfam Pectinesterase 96 223 IPR000070 GO:0030599|GO:0042545
Trre1g04165 357 Gene3D - 89 222 IPR012334 -
Trre1g04165 357 Gene3D - 223 357 IPR012334 -
Trre1g04165 357 Pfam Plant invertase/pectin methylesterase inhibitor 6 55 IPR006501 GO:0004857
Trre1g04165 357 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 1 59 IPR035513 -
Trre1g04165 357 SUPERFAMILY Pectin lyase-like 93 356 IPR011050 -
Trre1g04165 357 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 61 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04165 Trre-Chr1 46979807 46982546 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04165 4 357 Carbohydrate Esterase AT4G02330 44.196 3.50e-113 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04165 K01051 - gmx:100810329 513.457