Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04164 ATGAAAACATCAACTACCTTATACACTCTTCTTGTTTCCTTCATTATTATTCTCTCCTTCCTCTCTCCCTCTCTAGCATCTCTTCTTGATCCCTCCCCAAATACCACATGCAACATTACACCTTACCCATCTTTCTGTACAACTATTCTTCCTCCTAACTGTTTATCTATACATGATCAAACACTTTTCTTCATCCAACAATCTTTATCAATAACTAATACCATTTTTCAATTAATCTCTTCTTATTTTAACCAATCCAACATTCAATATTCTACTTTACTTGTGCTTCAAGATTGTCTTAATCTTTTTGAAATAAATATTGATTTCTTGTCCAATGTTCTCCAAGCCATACAAAGTTTAGAAACCAATACTAATACTACTATAATGAATAGTAATCAAGCTTATGATTTGCAAACCTTGCTTAGTGCTGTTTTAACTAATCATCAAACATGTTTAGATGGTTTTCATGAAGTTAATCCTTATCCAAAAATTAGCACTACTTTATCAAACCCTCTTTCTGATGGGACCAAACTTTATAGGATATCTCTTTCTTTTTTCGCTCAATATCGGGTTAATACCATCGTTGGAAGATTAACAGAAAAAGCAATTATAATGAATAATAGAAAATTGTTACAGACAAGTGTTGACAATGTGATTGTGAAACAAAAAGTGATTGTTAACCCTGATGGATCTGGAGATTTTGTGACAATAAATGAAGCTGTGGATGCTGCACCTAACAAAACAGGCACCAACAATGGCTACCATGTAATTTATGTTGTTGCTGGGATTTATAATGAGTATGTGTCTATTGCTAAGAGTAAAGAGAATCTAATGATTGTCGGAGATGGTATCGGTCGGACTGTGATTACCGGTAATCGTAGCGTGGTTGATGGTTGGACCACTTTCCAGTCTGCAACTTTTGCTGTAACTGGAAAAGGGTTTGTTGCTGTGAACATAACATTTCAAAACACCGCGGGATCAAGCAAGCATCAAGCAGTTGCGGTGAGAAACGGAGCTGACATGTCTGTTTTCTACAATTGTAGCTTCGAAGCACAAGGAAGAACAGATCCTAATCAAAACACTGGGTTCTCTATATGGAATTGTTACATTGTAGCAGCTAGTGATTTGGGAGGTGCAAATTATAATTATAATGGTATAAAGACATATTTGGGTAGGCCTTGGAAAGAGTATTCAAGAACAATTTACATGCAATGTTTTATTGATGGTTTGATTGATTCAAAGGGTTGGATTGAATGGTTAGGTGATTTTGCATTAAACACATTGTATTATGCTGAATTTGCTAATTGGGGACAAGGTTCAAATACTAGTAATAGGGTCACATGGAAAGGGTACCATCAAATTGATGGAAAAAATGCTGATGAATTCACAGTTTACAAATTTATTCAAGGTGACATGTGGTTGCCTAAGACAGGAGTGCCTTTTAGAGCTGGGTTATAG 1458 0.3532 MKTSTTLYTLLVSFIIILSFLSPSLASLLDPSPNTTCNITPYPSFCTTILPPNCLSIHDQTLFFIQQSLSITNTIFQLISSYFNQSNIQYSTLLVLQDCLNLFEINIDFLSNVLQAIQSLETNTNTTIMNSNQAYDLQTLLSAVLTNHQTCLDGFHEVNPYPKISTTLSNPLSDGTKLYRISLSFFAQYRVNTIVGRLTEKAIIMNNRKLLQTSVDNVIVKQKVIVNPDGSGDFVTINEAVDAAPNKTGTNNGYHVIYVVAGIYNEYVSIAKSKENLMIVGDGIGRTVITGNRSVVDGWTTFQSATFAVTGKGFVAVNITFQNTAGSSKHQAVAVRNGADMSVFYNCSFEAQGRTDPNQNTGFSIWNCYIVAASDLGGANYNYNGIKTYLGRPWKEYSRTIYMQCFIDGLIDSKGWIEWLGDFALNTLYYAEFANWGQGSNTSNRVTWKGYHQIDGKNADEFTVYKFIQGDMWLPKTGVPFRAGL 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04164 485 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 189 IPR035513 -
Trre1g04164 485 Pfam Plant invertase/pectin methylesterase inhibitor 34 183 IPR006501 GO:0004857
Trre1g04164 485 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 187 IPR035513 -
Trre1g04164 485 PANTHER PECTINESTERASE 17 351 - -
Trre1g04164 485 SUPERFAMILY Pectin lyase-like 221 484 IPR011050 -
Trre1g04164 485 Pfam Pectinesterase 224 351 IPR000070 GO:0030599|GO:0042545
Trre1g04164 485 NCBIfam pectinesterase inhibitor domain 10 173 IPR006501 GO:0004857
Trre1g04164 485 Gene3D - 217 350 IPR012334 -
Trre1g04164 485 Gene3D - 351 485 IPR012334 -
Trre1g04164 485 CDD PMEI-like_3 35 189 - -
Trre1g04164 485 SMART PMEI_2 28 185 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04164 Trre-Chr1 46979807 46982930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04164 11 485 Carbohydrate Esterase AT1G02810 40.620 7.85e-126 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04164 K01051 - gmx:100810329 608.601