Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04163 ATGGTTGAGGAAGATACAAAAAGAAGGAGGAGAATCATCATAATAAGCGTATCAACATTTTTACTAGTGGCTATGGTGGTTGCGGTTACCGTTGGCGTAAATTTTAATACTAGCAATGATTCTGGTTCCGAAAATAACAATGAGAAGTCTCACATGGCTTCAACTATAAAAGCAGTGAAAACCTTTTGCAAACCAACCGATTATAAAAAAGAATGCGAGGAGAATCTATTAGCAAATGTCGGCAACACAACGGATTCAAGAGAACTCATTAAATTGGCTTTCAATATTACTGTTGGAAAAATCGGGGAAGGAATCAAGAAAACCAATTTTTTGCAAGAGGTCGAGAAGGAACCTAGGGCAAAAATGGCACTTGACACATGCACGAAATTAATGGATCTATCAATTGGCGAATTCGATAGGTCGCTTGAGAGAATAAAAAAATTTGATCTCAACAATCTTGAAAGTTTTCTTATGAGTTTGAAAGTTTGGCTAAGTGGTGCAGTTACATATCAAGAAACTTGTTTAGATGCTTTTGAGAATACTACTAGTGATGCTAGTAACAAAATGAAGACTATTTTAACTTCTTCAATGCACATGACTAGCAATGCACTTGCAATCATTTCTGATTTGGCGGATAATATTTTGAATTTGAATTCGACAAGAGACGGACGTCAACTTATCGATATCGATAATTATAAGGGTAAATATGTAAGTGAACAAATTGTTGAACATGATGATGTTAATGAGGTTCCTTCTTGGGTTGGTGATGATTCAAGTGTTGGTGTTCGAAGACTTCTTAATGTACCTCAAAATAAACTCAAGCCTGATGCGGTTGTAGCTATAGATGGTAGTGGGAAGTTTAAGAGTATTAATGATGCTTTGAAGCTCGTTCCAAAAAAGAACCAAAAACCATTTATTGTTTATATCAAAGAAGGTGTTTACAATGAGTATGTTGAAGTTACCAAAAAAATGACTCATGTTGTGTTTTTTGGTGAAGGTCCCACCAAGACACGAATTACTGGCAAAAAGAATTTCATAGATGGAATTAACACTTATAACACCGCCACTGTTGCTGTTCAAGGAGATTACTTTGTTGCTATTAATATAGGATTTGAGAATTCAGCTGGACCTCAAAAACATCAAGCAGTAGCCATAAGGGTTCAAGCAGACAAAACAATCTTTTACAGATGTTCAATGGATGGATATCAAGACACATTATATACTCACGCCATGCGTCAATATTATCGTGAGTGTACCATTTCAGGTACCATTGATTTTGTCTTTGGTGATGCAATAGCTGTTTTTCAAAACTGCACTTTCATTGTAAGAAAACCATTACAAAGTCAGCAATGCATTGTAACTGCACAAGGCAGAAAAGAGGTCCATCAACCATCTGGTATAGTTATTCAAGATTGTTACATTGTTCCTGAAAATCATAATGTAAAACTCGAACACAAAGCATATCTCGCGCGTCCATGGAAGAATTTCTCAAGGACTATCTTCATGAATTCTTACATTGGTGATTTTATTCAGCCTGATGGGTATATGCCATGGCAAGGACCAAATGGTACTCTTACTGGCATGAATACTTGCTTTTATGCTGAGTATAATAATGTTGGCCCCGGTTCAGATAAATCAAAACGCGTAAAATGGCCCGGAGTTAAGGTTCTTAATTCAAAGTCTGCAACTAATTTTTTACCATCTAGGTTCTTTCATGGAGATGATTGGATTAAGATTACTAGAATTCCTTACTCTTCTGGTGAGAAACCCCCCAAGCACTAA 1782 0.3625 MVEEDTKRRRRIIIISVSTFLLVAMVVAVTVGVNFNTSNDSGSENNNEKSHMASTIKAVKTFCKPTDYKKECEENLLANVGNTTDSRELIKLAFNITVGKIGEGIKKTNFLQEVEKEPRAKMALDTCTKLMDLSIGEFDRSLERIKKFDLNNLESFLMSLKVWLSGAVTYQETCLDAFENTTSDASNKMKTILTSSMHMTSNALAIISDLADNILNLNSTRDGRQLIDIDNYKGKYVSEQIVEHDDVNEVPSWVGDDSSVGVRRLLNVPQNKLKPDAVVAIDGSGKFKSINDALKLVPKKNQKPFIVYIKEGVYNEYVEVTKKMTHVVFFGEGPTKTRITGKKNFIDGINTYNTATVAVQGDYFVAINIGFENSAGPQKHQAVAIRVQADKTIFYRCSMDGYQDTLYTHAMRQYYRECTISGTIDFVFGDAIAVFQNCTFIVRKPLQSQQCIVTAQGRKEVHQPSGIVIQDCYIVPENHNVKLEHKAYLARPWKNFSRTIFMNSYIGDFIQPDGYMPWQGPNGTLTGMNTCFYAEYNNVGPGSDKSKRVKWPGVKVLNSKSATNFLPSRFFHGDDWIKITRIPYSSGEKPPKH 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04163 593 NCBIfam pectinesterase inhibitor domain 54 210 IPR006501 GO:0004857
Trre1g04163 593 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 210 IPR035513 -
Trre1g04163 593 ProSitePatterns Pectinesterase signature 1. 301 320 IPR018040 -
Trre1g04163 593 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 212 IPR035513 -
Trre1g04163 593 FunFam Pectinesterase 55 211 - -
Trre1g04163 593 ProSitePatterns Pectinesterase signature 2. 420 429 IPR033131 -
Trre1g04163 593 Pfam Plant invertase/pectin methylesterase inhibitor 58 206 IPR006501 GO:0004857
Trre1g04163 593 SUPERFAMILY Pectin lyase-like 274 586 IPR011050 -
Trre1g04163 593 CDD PMEI-like_3 61 211 - -
Trre1g04163 593 Pfam Pectinesterase 276 574 IPR000070 GO:0030599|GO:0042545
Trre1g04163 593 Gene3D - 270 588 IPR012334 -
Trre1g04163 593 PANTHER PECTINESTERASE 15 578 - -
Trre1g04163 593 SMART PMEI_2 54 206 IPR006501 GO:0004857
Trre1g04163 593 FunFam Pectinesterase 270 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04163 Trre-Chr1 46969491 46972559 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04163 3 587 Carbohydrate Esterase AT3G05610 47.306 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04163 K01051 - gmx:100794799 807.749