Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04160 ATGTTAGGAGGAGATGCACAGAAAGGAAGAAGAGTCGCCATAATTGGCGTATCTTCCTTGTTATTGGTGGCTATGGTTGTTGCCGTCACTGTTGGCATCAACCAAAATCAAAATGGTTTGGATGATGGTATAGAGGACAATAGGAGAAATCATGTTGCTTCAACAATGAAAGCAGTAAAAACCATTTGTCATCCCACCGAATACAAGAAGGAATGTGAGGATGCCCTCACCTCAGAGGCGGAGGCCGACAATGTTACCGACCCAAAAGAACTTATTAAAATAGCATTCAATGTTACCATACAAAAAATTGGAGAAAAACTCAAAGAAACTGATCTAATGCATGAGGTTGAGAAGGATCCTAGATCAAAGGATGCACTTGATACTTGCAAGCAACTTATGGATCTCTCCATTGGTGAATTCACAAGGTCACTTGATGGAATGGGTGAGTTTCATCTTCAAAATATTGACAAATTTCTCATGAATGTGAAGGTTTGGCTAAATGGTGCTGTGACATACATGGATACATGCGTGGATGGGTTTGAGAACACTACCAGCGATGCTGGTAAGAAGATGAAGGAGTTGTTAACATCAAGCATGCACATGGGTAGCAATGCTCTTGCCATCATTTCTGATTTTGCAGACACTGTATCTGATTGGAACGTCACCAATATTATTGGGGGACGTCGTCTCCTTCAAGATTCAGAGACTCCATCTTGGGTTGATCATCGCATACTCCTTGATGCAAAGACAAACTCACTCAAACACAAGCCTAATGTTACCGTAGCTTTAGATGGTAGCGGTGATGTGAAGAGCATCAATGAGGCACTGACAAAGGTTCCTGAGAAGAGCAAAAAACCATTTGTGATCTACATTAAGGCGGGTGTTTACGCAGAGTATGTTGAAGTTACCAAGCATATGACCAATGTCGTGTTTATTGGTGAAGGTGGTAAGAAGTCAGTAATCACCGGCAACAAAAACTTCATCGATGGAATTAACACCTACAAAACGGCCACCGTTGCTATCCAAGGAGATCACTTTACCGCCATTAACATGGGTTTTGAGAACTCAGCTGGTCCACACAAACATCAAGCAGTGGCTTTAAGGGTTCAAGGAGATAAGACCATTTTCTTCAATTGCTCAATGGATGGATATCAAGACACACTTTATGTACACACCATGCGTCAATTCTACCGTGATTGCACCATTTCAGGTACCATTGACTTCATCTTTGGTAATGCATTAGCCGTTTTCCAAAACTGCAAATTCGTGGTTCGTAAGCCTATGTCAAACCAACAATGTATTGTGACCGCACAAGGAAGGAAAGAAAGATTCCAACCATCAGCAATAATCATCCAAGGGGGCTCTATTGTTTCCGATCCTGAGTTCTACCCTGTCAGGTTTGACAACAAGGCATACTTAGCCCGTCCATGGAAGAACTTCTCAAGGACTATCATTATGGATGCCTTCATTGATGATTTGATTCAACCCGATGGTTATTTGCCATGGCAAACAGAATTTGGTCCAACCAACATGGACACTTGCTTCTATGCTGAGTACCATAACTATGGCCCTGGTTCAGACAAATCAAAGCGTGTGAAATGGGCTGGAATCTGGAACCTAAATTCCAAGGCGGCACACTGGTTTGCACCATCCAAGTTCTTCCATGGTAGTGACTGGATCGAGAAAACCGGAATTCCTTACTTTTCTGGTATTCCTGAACACCAAAAGCACAAAAAGACCATACTTAAATGGTGA 1755 0.4222 MLGGDAQKGRRVAIIGVSSLLLVAMVVAVTVGINQNQNGLDDGIEDNRRNHVASTMKAVKTICHPTEYKKECEDALTSEAEADNVTDPKELIKIAFNVTIQKIGEKLKETDLMHEVEKDPRSKDALDTCKQLMDLSIGEFTRSLDGMGEFHLQNIDKFLMNVKVWLNGAVTYMDTCVDGFENTTSDAGKKMKELLTSSMHMGSNALAIISDFADTVSDWNVTNIIGGRRLLQDSETPSWVDHRILLDAKTNSLKHKPNVTVALDGSGDVKSINEALTKVPEKSKKPFVIYIKAGVYAEYVEVTKHMTNVVFIGEGGKKSVITGNKNFIDGINTYKTATVAIQGDHFTAINMGFENSAGPHKHQAVALRVQGDKTIFFNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFIFGNALAVFQNCKFVVRKPMSNQQCIVTAQGRKERFQPSAIIIQGGSIVSDPEFYPVRFDNKAYLARPWKNFSRTIIMDAFIDDLIQPDGYLPWQTEFGPTNMDTCFYAEYHNYGPGSDKSKRVKWAGIWNLNSKAAHWFAPSKFFHGSDWIEKTGIPYFSGIPEHQKHKKTILKW 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04160 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 212 IPR035513 -
Trre1g04160 584 ProSitePatterns Pectinesterase signature 2. 402 411 IPR033131 -
Trre1g04160 584 Gene3D - 252 571 IPR012334 -
Trre1g04160 584 PANTHER PECTINESTERASE 15 561 - -
Trre1g04160 584 FunFam Pectinesterase 55 213 - -
Trre1g04160 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 212 IPR035513 -
Trre1g04160 584 NCBIfam pectinesterase inhibitor domain 55 210 IPR006501 GO:0004857
Trre1g04160 584 FunFam Pectinesterase 252 571 - -
Trre1g04160 584 SMART PMEI_2 54 208 IPR006501 GO:0004857
Trre1g04160 584 CDD PMEI-like_3 61 213 - -
Trre1g04160 584 SUPERFAMILY Pectin lyase-like 256 570 IPR011050 -
Trre1g04160 584 Pfam Plant invertase/pectin methylesterase inhibitor 58 208 IPR006501 GO:0004857
Trre1g04160 584 Pfam Pectinesterase 258 556 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04160 Trre-Chr1 46741701 46743921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04160 5 571 Carbohydrate Esterase AT3G05610 48.155 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04160 K01051 - gmx:100803527 941.028